View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14854_high_19 (Length: 374)
Name: NF14854_high_19
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 7 - 354
Target Start/End: Original strand, 6791146 - 6791499
Alignment:
| Q |
7 |
cttgttaccaaagaacgtccaagaaaagatataaaaaggaaatgcatgaacttctataaaaatatgttatggggcaaggacaaatgcatgtgtatatcac |
106 |
Q |
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| T |
6791146 |
cttgttaccaaagaacgtccaagaaaagatataaaaaggaaatgcatgaacttctataaaaatatgttatggggcaaggacaaatgcatgtgtatatcac |
6791245 |
T |
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| Q |
107 |
atgaagtatttattgaaaacaaggtaacaccagtacttttgtattgagtttagtttgcatttaggcata--acactgacatataattttacaaatgagtg |
204 |
Q |
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| T |
6791246 |
atgaagtatttattgaaaacaaggtaacaccagtacttttgtattgagtttagcttgcatttaggcataacacactgacatataattttacaaatgagtg |
6791345 |
T |
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| Q |
205 |
caatggataatgatg-nnnnnnnaatggttaagattcaacttggtactccagtctaattttataagca----nnnnnnnaataaatacnnnnnnnnntgc |
299 |
Q |
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| T |
6791346 |
caatggataatgatgttttttttaatggttaagattcaacttggtactccagtctaattttataagcatttttttttttaataaatac-aaaaaaaatgc |
6791444 |
T |
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| Q |
300 |
ttccaggcagtatctcaatattttaacatcatatctatttcagtttcaatataaa |
354 |
Q |
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| T |
6791445 |
ttccaggcagtgtctcaatattttaacatcatatctatttcagtttcaatataaa |
6791499 |
T |
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