View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14854_high_21 (Length: 335)

Name: NF14854_high_21
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14854_high_21
NF14854_high_21
[»] chr6 (10 HSPs)
chr6 (73-271)||(17907736-17907935)
chr6 (166-271)||(24216663-24216768)
chr6 (83-212)||(14796330-14796459)
chr6 (1-60)||(24217080-24217139)
chr6 (159-210)||(19971565-19971616)
chr6 (158-272)||(23292483-23292596)
chr6 (3-60)||(17912746-17912803)
chr6 (158-212)||(12478823-12478877)
chr6 (158-212)||(12484356-12484410)
chr6 (3-37)||(17908035-17908069)
[»] chr7 (13 HSPs)
chr7 (69-271)||(15818108-15818311)
chr7 (118-255)||(8249868-8250004)
chr7 (73-252)||(17151601-17151780)
chr7 (1-67)||(15817828-15817894)
chr7 (1-67)||(17910219-17910285)
chr7 (173-271)||(17909823-17909923)
chr7 (3-67)||(26426825-26426888)
chr7 (1-60)||(17843018-17843077)
chr7 (1-59)||(6461675-6461733)
chr7 (1-67)||(17151321-17151387)
chr7 (73-219)||(20376959-20377104)
chr7 (159-218)||(15011197-15011254)
chr7 (76-209)||(20146614-20146748)
[»] scaffold0115 (2 HSPs)
scaffold0115 (73-218)||(41646-41789)
scaffold0115 (1-60)||(41372-41431)
[»] scaffold0613 (2 HSPs)
scaffold0613 (73-272)||(3182-3382)
scaffold0613 (8-60)||(2915-2967)
[»] chr4 (10 HSPs)
chr4 (69-271)||(11251715-11251916)
chr4 (116-236)||(18421102-18421222)
chr4 (3-67)||(18420785-18420849)
chr4 (3-67)||(10116264-10116328)
chr4 (159-269)||(20323066-20323177)
chr4 (3-59)||(20847122-20847178)
chr4 (158-212)||(31933250-31933304)
chr4 (1-67)||(12410302-12410368)
chr4 (158-212)||(12453078-12453131)
chr4 (19-67)||(13933024-13933072)
[»] scaffold0097 (1 HSPs)
scaffold0097 (81-218)||(22572-22709)
[»] chr2 (3 HSPs)
chr2 (81-218)||(20718735-20718872)
chr2 (32-67)||(21652118-21652153)
chr2 (2-67)||(27401980-27402046)
[»] scaffold0111 (1 HSPs)
scaffold0111 (73-212)||(28250-28390)
[»] chr5 (4 HSPs)
chr5 (69-193)||(37277475-37277596)
chr5 (163-272)||(26724685-26724795)
chr5 (1-67)||(34178885-34178949)
chr5 (1-67)||(37275522-37275588)
[»] scaffold0338 (1 HSPs)
scaffold0338 (4-63)||(18572-18632)
[»] scaffold0035 (1 HSPs)
scaffold0035 (2-60)||(71311-71370)
[»] scaffold0014 (1 HSPs)
scaffold0014 (2-59)||(201851-201907)
[»] chr3 (4 HSPs)
chr3 (3-59)||(17385073-17385129)
chr3 (158-213)||(19707317-19707373)
chr3 (3-58)||(6808644-6808699)
chr3 (19-67)||(19978673-19978721)
[»] scaffold0350 (1 HSPs)
scaffold0350 (157-212)||(16665-16719)
[»] scaffold0161 (1 HSPs)
scaffold0161 (165-212)||(4934-4981)
[»] scaffold0024 (1 HSPs)
scaffold0024 (165-212)||(101328-101375)
[»] chr8 (6 HSPs)
chr8 (157-212)||(6057240-6057294)
chr8 (1-57)||(16216064-16216121)
chr8 (2-67)||(17124585-17124650)
chr8 (77-150)||(17984738-17984810)
chr8 (23-67)||(24270312-24270356)
chr8 (77-168)||(38492557-38492649)
[»] scaffold1869 (1 HSPs)
scaffold1869 (1-67)||(537-603)
[»] scaffold0174 (1 HSPs)
scaffold0174 (73-149)||(24188-24261)
[»] chr1 (1 HSPs)
chr1 (159-219)||(30821284-30821344)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 73 - 271
Target Start/End: Complemental strand, 17907935 - 17907736
Alignment:
Q  73 gtgatgtattatgatacatgtgacatgactattttagaaaa-tatattatttgttgatgagatgttattattttattctaccattagttttgaaaaatta 171  Q
    ||||||||||||||||||||| |||||  ||||||     | ||| |||||||  ||||||||||||| || ||||||| | |  |||||||||||||||    
T  17907935 gtgatgtattatgatacatgtcacatggatattttttttgagtattttatttggggatgagatgttat-atattattctgctaccagttttgaaaaatta 17907837  T
Q  172 tttatgcatgttttggatt-aattgaagacgtagcatctaaactctttaaaaagttgtattctttacacgatttatcgcattaagagtttagggtgttac 270  Q
     ||||| |||||| ||||| ||||||||| |||||||||||||||||| || ||||||||||||| || |||||||||||||||| ||||||||||||||    
T  17907836 attatgtatgtttcggatttaattgaagatgtagcatctaaactctttgaatagttgtattctttgcatgatttatcgcattaagggtttagggtgttac 17907737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 271
Target Start/End: Complemental strand, 24216768 - 24216663
Alignment:
Q  166 aaattatttatgcatgttttggattaattgaagacgtagcatctaaactctttaaaaagttgtattctttacacgatttatcgcattaagagtttagggt 265  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||| ||||| ||   || |||| ||| |  |||||||||| ||||| |||||||||    
T  24216768 aaattaattatgcatgttttggattaattgaagatgtagcatctaaagtctttgaatgattatattatttgcgtgatttatcgctttaagggtttagggt 24216669  T
Q  266 gttaca 271  Q
    ||||||    
T  24216668 gttaca 24216663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 14796459 - 14796330
Alignment:
Q  83 atgatacatgtgacatgactattttagaaaatatattatttgttgatgagatgttattattttattctaccattagttttgaaaaattatttatgcatgt 182  Q
    ||||||||||||||||| ||| ||| |||| | ||||| |||||||||||||| |||||| |||||   |  | | ||||||||||||||||||| || |    
T  14796459 atgatacatgtgacatggctaatttggaaattctattaattgttgatgagatgatattatattatttcgctgtgaattttgaaaaattatttatgtatat 14796360  T
Q  183 tttggattaattgaagacgtagcatctaaa 212  Q
    |||||| | |||||||| ||| ||||||||    
T  14796359 tttggacttattgaagatgtaacatctaaa 14796330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 24217139 - 24217080
Alignment:
Q  1 atttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgaccg 60  Q
    ||||||||||||||||||||||||| || ||||||||| || ||||||||||||||||||    
T  24217139 atttgattatatattatttgtggaaaataatctaacccccagtggtcgtttggttgaccg 24217080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 19971565 - 19971616
Alignment:
Q  159 ttttgaaaaattatttatgcatgttttggattaattgaagacgtagcatcta 210  Q
    |||||| |||||| |||| |||||||||||||||||||||| ||||||||||    
T  19971565 ttttgacaaattagttatacatgttttggattaattgaagatgtagcatcta 19971616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 272
Target Start/End: Complemental strand, 23292596 - 23292483
Alignment:
Q  158 gttttgaaaaattatttatgcatgttttggattaattgaagacgtagcatctaaactctttaaaaagttgtattctttacacgatttatcgcattaagag 257  Q
    |||||||||||||| |||||||||||| ||| | || ||||| ||| |||||||| ||||  |  | ||||||| |||||  ||||| |||  |||||||    
T  23292596 gttttgaaaaattaattatgcatgttt-ggacttatagaagaagtaacatctaaattcttatatgatttgtattatttacgtgatttctcgttttaagag 23292498  T
Q  258 tttagggtgttacaa 272  Q
    |||||||||||||||    
T  23292497 tttagggtgttacaa 23292483  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 17912803 - 17912746
Alignment:
Q  3 ttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgaccg 60  Q
    ||||||||||||||||||||||||||  ||||||||  | |||| |||||||||||||    
T  17912803 ttgattatatattatttgtggaatatattctaacccctagtggttgtttggttgaccg 17912746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 12478823 - 12478877
Alignment:
Q  158 gttttgaaaaattatttatgcatgttttggattaattgaagacgtagcatctaaa 212  Q
    ||||||||||||||||  ||||||||||||| | ||||| || ||||||||||||    
T  12478823 gttttgaaaaattattgttgcatgttttggacttattgacgaagtagcatctaaa 12478877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 12484410 - 12484356
Alignment:
Q  158 gttttgaaaaattatttatgcatgttttggattaattgaagacgtagcatctaaa 212  Q
    |||||||||||||| ||||||||||| |||| | || ||||| ||||||||||||    
T  12484410 gttttgaaaaattacttatgcatgttctggacttatagaagaagtagcatctaaa 12484356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 17908069 - 17908035
Alignment:
Q  3 ttgattatatattatttgtggaatatgatctaacc 37  Q
    |||||||||||||||||||||||||| ||||||||    
T  17908069 ttgattatatattatttgtggaatataatctaacc 17908035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 69 - 271
Target Start/End: Original strand, 15818108 - 15818311
Alignment:
Q  69 tttagtgatgtattatgatacatgtgacatgactattttagaaaatatattatttgttgatgagatgttattattttattctaccattagttttgaaaaa 168  Q
    ||||||||||||||||||||||| |||||||  |||||| || | | |||||| ||||||||||||||||  || ||||||  |  | ||||||||||||    
T  15818108 tttagtgatgtattatgatacatatgacatgggtattttggagagtttattatgtgttgatgagatgttacaatattattccgctgtgagttttgaaaaa 15818207  T
Q  169 -ttatttatgcatgttttggattaattgaagacgtagcatctaaactctttaaaaagttgtattctttacacgatttatcgcattaagagtttagggtgt 267  Q
     |||| |||||||||||| ||||||||||||| || ||||||||| || || || ||| |||||| || || ||||| |||||||  | ||||||| |||    
T  15818208 attatctatgcatgttttagattaattgaagatgtggcatctaaattccttgaatagtcgtattcgttgcaagatttgtcgcattccgggtttaggatgt 15818307  T
Q  268 taca 271  Q
    ||||    
T  15818308 taca 15818311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 118 - 255
Target Start/End: Complemental strand, 8250004 - 8249868
Alignment:
Q  118 ttatttgttgatgagatgttattattttattctaccattagttttgaaaaattatttatgcatgttttggattaattgaagacgtagcatctaaactctt 217  Q
    ||||||||||||||||| |||| ||| |||||  | |  ||||||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||| |    
T  8250004 ttatttgttgatgagatattatgattgtattccgctacgagttttgaaaaattattcatgcatgttttagtttaattgaagatgtagcatctaaactc-t 8249906  T
Q  218 taaaaagttgtattctttacacgatttatcgcattaag 255  Q
    | || ||||||||||||| || |||||||||| |||||    
T  8249905 tgaatagttgtattctttgcatgatttatcgctttaag 8249868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 73 - 252
Target Start/End: Original strand, 17151601 - 17151780
Alignment:
Q  73 gtgatgtattatgatacatgtgacatgactattttagaaaatatattatttgttgatgagatgttattattttattctaccattagttttgaaaaattat 172  Q
    |||||||||||||||||||||||||||  || ||| |||| | || ||| |||||||| |||||||| || || |||     | |||| | |||||||||    
T  17151601 gtgatgtattatgatacatgtgacatgggtactttggaaagtgtagtatgtgttgatgtgatgttatgatatttttccgatgtgagttataaaaaattat 17151700  T
Q  173 ttatgcatgttttggattaattgaagacgtagcatctaaactctttaaaaagttgtattctttacacgatttatcgcatt 252  Q
     |||||||| ||||||||||||||||| ||||||||||||||| || || | ||||||| ||| |  |||||||||||||    
T  17151701 ctatgcatgatttggattaattgaagatgtagcatctaaactccttgaataattgtattgtttgcttgatttatcgcatt 17151780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 15817828 - 15817894
Alignment:
Q  1 atttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgaccgtctgcct 67  Q
    |||||||||||||||||||||||||||| ||||||||  || |||||||||||||||||||||||||    
T  15817828 atttgattatatattatttgtggaatattatctaacctccagtggtcgtttggttgaccgtctgcct 15817894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 17910285 - 17910219
Alignment:
Q  1 atttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgaccgtctgcct 67  Q
    |||||||||||||||||||||||||||| ||||| |||  | |||||||||||||||||||||||||    
T  17910285 atttgattatatattatttgtggaatataatctagccccaagtggtcgtttggttgaccgtctgcct 17910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 17909923 - 17909823
Alignment:
Q  173 ttatgcatgttttggattaattgaagacgtagcatctaaactc-tttaaaaagttgtattctttacacgatttatcgcatt-aagagtttagggtgttac 270  Q
    |||||||||||||| |||||||||||| ||||||||||||||| ||| || | ||||||| ||| || ||||||| || || ||| ||||||||||||||    
T  17909923 ttatgcatgttttgaattaattgaagatgtagcatctaaactcttttgaataattgtattatttgcatgatttattgcgttaaagggtttagggtgttac 17909824  T
Q  271 a 271  Q
    |    
T  17909823 a 17909823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 26426888 - 26426825
Alignment:
Q  3 ttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgaccgtctgcct 67  Q
    ||||||||||||| |||||||||||| ||||||| |  | |||||||||||||||||||||||||    
T  26426888 ttgattatatattttttgtggaatattatctaactc-tagtggtcgtttggttgaccgtctgcct 26426825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 17843077 - 17843018
Alignment:
Q  1 atttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgaccg 60  Q
    ||||||||||||||||||||||  || | ||||||||| || ||||||||||||||||||    
T  17843077 atttgattatatattatttgtgagatgttatctaaccctcaatggtcgtttggttgaccg 17843018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 6461675 - 6461733
Alignment:
Q  1 atttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgacc 59  Q
    |||||||||||||||||||||||||||| ||||||||   | |||||||| ||||||||    
T  6461675 atttgattatatattatttgtggaatataatctaacctctagtggtcgttcggttgacc 6461733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 17151321 - 17151387
Alignment:
Q  1 atttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgaccgtctgcct 67  Q
    ||||||||||||||||||| |||||||| |||||| ||  | |||||||||||||| ||| ||||||    
T  17151321 atttgattatatattatttatggaatataatctaaaccctagtggtcgtttggttggccggctgcct 17151387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 20376959 - 20377104
Alignment:
Q  73 gtgatgtattatgatacatgtgacatgactattttagaaaatatattatttgttgatgagatgttattattttattctaccattagttttgaaaaattat 172  Q
    ||||||||||||||||||||||  ||| ||||||| || | |   |||||||||||||||||||||| ||  | ||   |    ||||||||||||||||    
T  20376959 gtgatgtattatgatacatgtggaatggctattttggagatt---ttatttgttgatgagatgttatgataatgttacgctgcgagttttgaaaaattat 20377055  T
Q  173 ttatgcatg-ttttggatt-aattgaagacgtagcatctaaactcttta 219  Q
    ||||| ||| ||||||||| ||||||||| |||| ||||||| ||||||    
T  20377056 ttatgtatgtttttggattaaattgaagatgtaggatctaaattcttta 20377104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 15011197 - 15011254
Alignment:
Q  159 ttttgaaaaattatttatgcatgttttggattaattgaagacgtagcatctaaactcttt 218  Q
    ||||| ||||||||||||||||  | |||||| ||||||||||||||||||||| |||||    
T  15011197 ttttgcaaaattatttatgcat--tgtggatttattgaagacgtagcatctaaattcttt 15011254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 209
Target Start/End: Complemental strand, 20146748 - 20146614
Alignment:
Q  76 atgtattatgatacatgtgacatgactattttagaaaatatattatttgttgatgagatgttattattttatt---ctaccattagttttgaaaaattat 172  Q
    ||||||||||||| ||||| |||| ||| ||| || | | |||||| ||||||||||||||||| || |||||   || | ||  |||||||||||| |     
T  20146748 atgtattatgatatatgtggcatggctaatttggagattttattatctgttgatgagatgttatgatattatttcgctgcaat--gttttgaaaaatcaa 20146651  T
Q  173 ttatgcatgttttggattaattgaagacgtagcatct 209  Q
    |||||||||||||||| | || ||||| ||| |||||    
T  20146650 ttatgcatgttttggacttatagaagaagtaacatct 20146614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 218
Target Start/End: Original strand, 41646 - 41789
Alignment:
Q  73 gtgatgtattatgatacatgtgacatgactattttagaaaatatattatttgttgatgagatgttattattttattctaccattagttttgaaaaattat 172  Q
    ||||||||||||||||||||  ||||| ||| ||| || | | |||||||||||||||||||||||| || ||||||| |    ||||||| ||||  |     
T  41646 gtgatgtattatgatacatg--acatggctactttggagattttattatttgttgatgagatgttatgatattattctgctgcgagttttggaaaaaaaa 41743  T
Q  173 ttatgcatgttttggattaattgaagacgtagcatctaaactcttt 218  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  41744 ttatgcatgttttggattaattgaagatgtagcatctaaactcttt 41789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 41372 - 41431
Alignment:
Q  1 atttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgaccg 60  Q
    |||| |||||||||||||| |||||||| |||||||||  | ||||||||||||||||||    
T  41372 atttcattatatattatttatggaatataatctaacccgtagtggtcgtttggttgaccg 41431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 73 - 272
Target Start/End: Original strand, 3182 - 3382
Alignment:
Q  73 gtgatgtattatgatacatgtgacatgactattttagaaaatat-attatttgttgatgagatgttattattttattctaccattagttttgaaaaatta 171  Q
    ||||||||||||| ||||||||||||| ||||||| | | || | ||||| | || |||||||||||| ||  |||||  |    ||||||||||||  |    
T  3182 gtgatgtattatgctacatgtgacatggctattttgggagattttattatatattaatgagatgttatgatactattccgctgcaagttttgaaaaaaaa 3281  T
Q  172 tttatgcatgttttggattaattgaagacgtagcatctaaactctttaaaaagttgtattctttacacgatttatcgcattaagagtttagggtgttaca 271  Q
     |||||||| |||||||||||||||||| |||||| ||||||||||| |  | ||| ||| ||| || |||||||||||||||| |||||||||||||||    
T  3282 attatgcatattttggattaattgaagatgtagcacctaaactctttgagtaattgaattatttgcatgatttatcgcattaagggtttagggtgttaca 3381  T
Q  272 a 272  Q
    |    
T  3382 a 3382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 2915 - 2967
Alignment:
Q  8 tatatattatttgtggaatatgatctaacccacattggtcgtttggttgaccg 60  Q
    ||||||||||||||||||||| |||||| || || ||||| ||||||||||||    
T  2915 tatatattatttgtggaatataatctaatccccagtggtcatttggttgaccg 2967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 69 - 271
Target Start/End: Complemental strand, 11251916 - 11251715
Alignment:
Q  69 tttagtgatgtattatgatacatgtgacatgactattttagaaaatatattatttgttgatgagatgttattattttattctaccattagttttgaaaaa 168  Q
    ||||||||||||| ||||||||||||||||| |||| || || | | |||||| |||| ||||| |||||| || ||||||  |    ||||||||||||    
T  11251916 tttagtgatgtatcatgatacatgtgacatggctatgttggagattttattatctgtttatgagttgttatgatgttattccgcggcgagttttgaaaaa 11251817  T
Q  169 ttatttatgcatgttttggattaattgaagacgtagcatctaaactctttaaaaagttgtattctttacacgatttatcgcattaagagtttagggtgtt 268  Q
    |||||||||||||| ||||||| |||||||| |||  ||||||| |||||| |   ||||||  ||| || |||||||||| ||||| ||| ||||||||    
T  11251816 ttatttatgcatgtcttggatttattgaagatgtaatatctaaa-tctttatatgattgtatcatttgcatgatttatcgctttaagggttcagggtgtt 11251718  T
Q  269 aca 271  Q
    |||    
T  11251717 aca 11251715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 18421102 - 18421222
Alignment:
Q  116 tattatttgttgatgagatgttattattttattctaccattagttttgaaaaattatttatgcatgttttggattaattgaagacgtagcatctaaactc 215  Q
    |||||||||| ||||||||||||| || ||||||     | |||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||     
T  18421102 tattatttgtcgatgagatgttatgatattattccgttgtgagttgtgaaaaattatttatacatgttttggattaattgaagatgtagcatctaaactt 18421201  T
Q  216 tttaaaaagttgtattcttta 236  Q
    ||| || ||||||||| ||||    
T  18421202 tttgaatagttgtattattta 18421222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 18420785 - 18420849
Alignment:
Q  3 ttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgaccgtctgcct 67  Q
    |||||||||||||||||||||||||| ||||||||  || |||||||||||||||||||| ||||    
T  18420785 ttgattatatattatttgtggaatattatctaacctccagtggtcgtttggttgaccgtcggcct 18420849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 10116264 - 10116328
Alignment:
Q  3 ttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgaccgtctgcct 67  Q
    |||||||||||||||||| ||||| | ||||||||  || |||||||||||||||||||||||||    
T  10116264 ttgattatatattatttgcggaatgttatctaacctccaatggtcgtttggttgaccgtctgcct 10116328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 20323066 - 20323177
Alignment:
Q  159 ttttgaaaaattatttatgcatgttttggattaattgaagacgtagcatctaaactctt-taaaaagttgtattctttacacgatttatcgcattaagag 257  Q
    |||||||||  || ||||||||||||||   |||||||||| |||||||||||||||||  ||||| ||| ||| ||| || ||||||| ||||| || |    
T  20323066 ttttgaaaacatagttatgcatgttttgagataattgaagatgtagcatctaaactcttccaaaaaattgaattatttgcatgatttattgcattcaggg 20323165  T
Q  258 tttagggtgtta 269  Q
    ||||||||||||    
T  20323166 tttagggtgtta 20323177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 20847178 - 20847122
Alignment:
Q  3 ttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgacc 59  Q
    ||||||||||||||||| |||||||| ||||||||| || |||||||| ||||||||    
T  20847178 ttgattatatattatttttggaatataatctaacccccaatggtcgttcggttgacc 20847122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 31933304 - 31933250
Alignment:
Q  158 gttttgaaaaattatttatgcatgttttggattaattgaagacgtagcatctaaa 212  Q
    ||||||||||||||||||||||||||||||| | || ||||| ||| ||||||||    
T  31933304 gttttgaaaaattatttatgcatgttttggacttatagaagaagtaacatctaaa 31933250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 12410302 - 12410368
Alignment:
Q  1 atttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgaccgtctgcct 67  Q
    |||||||||||| || | |||||||||| |||||||||  | ||||||||||||| |||| ||||||    
T  12410302 atttgattatattttttgtgtggaatattatctaacccctagtggtcgtttggttaaccgcctgcct 12410368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 12453078 - 12453131
Alignment:
Q  158 gttttgaaaaattatttatgcatgttttggattaattgaagacgtagcatctaaa 212  Q
    |||||||||||||||||||||||| |||||||| || ||||| |||| |||||||    
T  12453078 gttttgaaaaattatttatgcatg-tttggatttatagaagaagtagaatctaaa 12453131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 13933072 - 13933024
Alignment:
Q  19 tgtggaatatgatctaacccacattggtcgtttggttgaccgtctgcct 67  Q
    |||| ||||| ||||||||| || |||||||||||||||||| ||||||    
T  13933072 tgtgaaatattatctaacccccagtggtcgtttggttgaccgcctgcct 13933024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 22709 - 22572
Alignment:
Q  81 ttatgatacatgtgacatgactattttagaaaatatattatttgttgatgagatgttattattttattctaccattagttttgaaaaattatttatgcat 180  Q
    ||||||||||||||||||| |||||||      | |||||| || |||||||||||||| || ||||||  |    ||||||||||||||| ||||||||    
T  22709 ttatgatacatgtgacatggctattttcatggttttattatgtgatgatgagatgttatgatattattcctcttcaagttttgaaaaattaattatgcat 22610  T
Q  181 gttttggattaattgaagacgtagcatctaaactcttt 218  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  22609 gttttggattaattgaagatgtagcatctaaactcttt 22572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 20718872 - 20718735
Alignment:
Q  81 ttatgatacatgtgacatgactattttagaaaatatattatttgttgatgagatgttattattttattctaccattagttttgaaaaattatttatgcat 180  Q
    ||||||||||||||||||| |||||||      | |||||| || |||||||||||||| || ||||||  |    ||||||||||||||| ||||||||    
T  20718872 ttatgatacatgtgacatggctattttcatggttttattatgtgatgatgagatgttatgatattattcctcttcaagttttgaaaaattaattatgcat 20718773  T
Q  181 gttttggattaattgaagacgtagcatctaaactcttt 218  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  20718772 gttttggattaattgaagatgtagcatctaaactcttt 20718735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 21652153 - 21652118
Alignment:
Q  32 ctaacccacattggtcgtttggttgaccgtctgcct 67  Q
    ||||||||||||||||||||||||||| ||||||||    
T  21652153 ctaacccacattggtcgtttggttgactgtctgcct 21652118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 27402046 - 27401980
Alignment:
Q  2 tttgattatatattatttgtggaatatgatctaacccac-attggtcgtttggttgaccgtctgcct 67  Q
    ||||||||||| ||||||||||| | | ||||||||| | | |||||||||||||||||| ||||||    
T  27402046 tttgattatattttatttgtggattgttatctaaccccccagtggtcgtttggttgaccgcctgcct 27401980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 212
Target Start/End: Complemental strand, 28390 - 28250
Alignment:
Q  73 gtgatgtattatgatacatgtgacatgactattttagaaaatatattatttgttgatgagatgttattattttattc---taccattagttttgaaaaat 169  Q
    ||||| ||||||||||||||||||||| ||||||| || | | |||||| ||||||||| || |||| || ||||||   | | ||  ||||| ||||||    
T  28390 gtgatatattatgatacatgtgacatggctattttggatattttattatctgttgatgatatattatgatattattccgctgcgat--gttttaaaaaat 28293  T
Q  170 tatttatgcatgttttggattaattgaagacgtagcatctaaa 212  Q
    ||||| |||||||||||||||||||||||  ||||||||||||    
T  28292 tatttttgcatgttttggattaattgaagttgtagcatctaaa 28250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 193
Target Start/End: Complemental strand, 37277596 - 37277475
Alignment:
Q  69 tttagtgatgtattatgatacatgtgacatgactattttagaaaatatattatttgttgatgagatgttattattttattctaccattagttttgaaaaa 168  Q
    ||||||||||||||||||||||||||||||| ||||||| || |||   |||| | |||||||||| |||| || |||||||    | |  |||||||||    
T  37277596 tttagtgatgtattatgatacatgtgacatggctattttggagaat---ttatgtattgatgagatattatgatattattctgatgtgatgtttgaaaaa 37277500  T
Q  169 ttatttatgcatgttttggattaat 193  Q
    |||||||||| |||||| |||||||    
T  37277499 ttatttatgcgtgttttagattaat 37277475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 272
Target Start/End: Complemental strand, 26724795 - 26724685
Alignment:
Q  163 gaaaaattatttatgcatgttttggattaattgaagacgtagcatctaaactcttt-aaaaagttgtattctttacacgatttatcgcattaagagttta 261  Q
    |||||||||||||||||||||||| | | || ||||| |||||||||||| |||||  |  | || |||| ||| ||  ||||||||| |||||||||||    
T  26724795 gaaaaattatttatgcatgttttgaacttatagaagaagtagcatctaaattctttgcatgatttatattatttgcataatttatcgctttaagagttta 26724696  T
Q  262 gggtgttacaa 272  Q
    |||||||||||    
T  26724695 gggtgttacaa 26724685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 34178885 - 34178949
Alignment:
Q  1 atttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgaccgtctgcct 67  Q
    |||||||||| | ||||||||||||||| ||||||||| ||||||||||||| |||||| |||||||    
T  34178885 atttgattatgt-ttatttgtggaatataatctaaccc-cattggtcgtttgcttgaccatctgcct 34178949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37275588 - 37275522
Alignment:
Q  1 atttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgaccgtctgcct 67  Q
    |||||||||||  |||||| |||||||| ||||||||  || |||||||||||| || |||||||||    
T  37275588 atttgattatactttatttttggaatattatctaaccatcaatggtcgtttggtggagcgtctgcct 37275522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 18572 - 18632
Alignment:
Q  4 tgattatatattatt-tgtggaatatgatctaacccacattggtcgtttggttgaccgtct 63  Q
    ||||||||| ||||| |||||||||| ||||||||| || |||||||||||||||||||||    
T  18572 tgattatattttattatgtggaatattatctaaccctcagtggtcgtttggttgaccgtct 18632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 71311 - 71370
Alignment:
Q  2 tttgattatatattatt-tgtggaatatgatctaacccacattggtcgtttggttgaccg 60  Q
    ||||||||||| ||||| |||||||||| ||||||||| || ||||||||||||||||||    
T  71311 tttgattatatcttattatgtggaatattatctaaccctcactggtcgtttggttgaccg 71370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 201907 - 201851
Alignment:
Q  2 tttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgacc 59  Q
    |||||||||||||||||| |||||||  ||||||||| || |||||||||||||||||    
T  201907 tttgattatatattatttatggaatactatctaaccc-cagtggtcgtttggttgacc 201851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 17385129 - 17385073
Alignment:
Q  3 ttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgacc 59  Q
    |||||||||||||||||||||||||| || ||||||  | |||||||| ||||||||    
T  17385129 ttgattatatattatttgtggaatataatttaacccctagtggtcgttcggttgacc 17385073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 19707373 - 19707317
Alignment:
Q  158 gttttgaaaaattatttatgcatgttttgg-attaattgaagacgtagcatctaaac 213  Q
    |||||||||||||||||||||||||||||| | | || ||||| |||||||||||||    
T  19707373 gttttgaaaaattatttatgcatgttttggaacttatagaagaagtagcatctaaac 19707317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 6808699 - 6808644
Alignment:
Q  3 ttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgac 58  Q
    ||||| ||||||||||||||||||||  ||||||||  | ||||||||||||||||    
T  6808699 ttgataatatattatttgtggaatattgtctaacccctagtggtcgtttggttgac 6808644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 19978673 - 19978721
Alignment:
Q  19 tgtggaatatgatctaacccacattggtcgtttggttgaccgtctgcct 67  Q
    |||||||||| || |||||  || |||||||||||||||||||||||||    
T  19978673 tgtggaatataatataacctccagtggtcgtttggttgaccgtctgcct 19978721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0350 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 16719 - 16665
Alignment:
Q  157 agttttgaaaaattatttatgcatgttttggattaattgaagacgtagcatctaaa 212  Q
    ||||||||||||||| ||||||||| ||||| ||||||||| | ||||||||||||    
T  16719 agttttgaaaaattaattatgcatg-tttggtttaattgaaaatgtagcatctaaa 16665  T

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Target: scaffold0161 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 4934 - 4981
Alignment:
Q  165 aaaattatttatgcatgttttggattaattgaagacgtagcatctaaa 212  Q
    |||||||||||||||||||||||| | || ||||| ||||||||||||    
T  4934 aaaattatttatgcatgttttggacttatagaagaagtagcatctaaa 4981  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 101328 - 101375
Alignment:
Q  165 aaaattatttatgcatgttttggattaattgaagacgtagcatctaaa 212  Q
    |||||||||||||||||||||||| | || ||||| ||||||||||||    
T  101328 aaaattatttatgcatgttttggacttatagaagaagtagcatctaaa 101375  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 6057294 - 6057240
Alignment:
Q  157 agttttgaaaaattatttatgcatgttttggattaattgaagacgtagcatctaaa 212  Q
    ||||||||||||||| ||||||||| ||||| ||||||||| | ||||||||||||    
T  6057294 agttttgaaaaattaattatgcatg-tttggtttaattgaaaatgtagcatctaaa 6057240  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 16216121 - 16216064
Alignment:
Q  1 atttgattatatattatt-tgtggaatatgatctaacccacattggtcgtttggttga 57  Q
    |||||||||||| ||||| |||||||||| ||||||||  || |||||||||||||||    
T  16216121 atttgattatatgttattatgtggaatataatctaacctccagtggtcgtttggttga 16216064  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 17124650 - 17124585
Alignment:
Q  2 tttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgaccgtctgcct 67  Q
    ||||||||||||||| ||||||||| | |||||||||  | | ||| |||||||||| ||||||||    
T  17124650 tttgattatatattacttgtggaatgttatctaacccctagttgtcatttggttgactgtctgcct 17124585  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 17984738 - 17984810
Alignment:
Q  77 tgtattatgatacatgtgacatgactattttagaaaatatattatttgttgatgagatgttattattttattct 150  Q
    ||||||||||||||| |||||||||| |||| || | || ||||| |||||||||||| |||| || |||||||    
T  17984738 tgtattatgatacatatgacatgactgttttggagatta-attatctgttgatgagatattatgatattattct 17984810  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 24270356 - 24270312
Alignment:
Q  23 gaatatgatctaacccacattggtcgtttggttgaccgtctgcct 67  Q
    |||||| ||||||||| || |||||||||||||||||| ||||||    
T  24270356 gaatattatctaacccccagtggtcgtttggttgaccgcctgcct 24270312  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 168
Target Start/End: Original strand, 38492557 - 38492649
Alignment:
Q  77 tgtattatgatacatgtgacatgactattttagaaaatat-attatttgttgatgagatgttattattttattctaccattagttttgaaaaa 168  Q
    |||||||||| |||||||||||  ||||||| || | | | ||||||||||||||||||| ||| || ||||||  |  ||||||||||||||    
T  38492557 tgtattatgaaacatgtgacatagctattttggagatttttattatttgttgatgagatgatatgatattattccgctgttagttttgaaaaa 38492649  T

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Target: scaffold1869 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1869
Description:

Target: scaffold1869; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 603 - 537
Alignment:
Q  1 atttgattatatattatttgtggaatatgatctaacccacattggtcgtttggttgaccgtctgcct 67  Q
    |||||||||||| ||||||||||||| | || |||||| || ||||| ||||||||||  |||||||    
T  603 atttgattatattttatttgtggaatgttatataaccctcagtggtcatttggttgactatctgcct 537  T

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Target: scaffold0174 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 24188 - 24261
Alignment:
Q  73 gtgatgtattatgatacatgtgacatgactattttagaaaatatattatttgttgatgagatgttattattttattc 149  Q
    ||||||||||||  ||| ||||||||| ||||||| || |||   |||||||||||||||||||||| || ||||||    
T  24188 gtgatgtattatagtacttgtgacatggctattttggagaat---ttatttgttgatgagatgttatgatgttattc 24261  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 30821344 - 30821284
Alignment:
Q  159 ttttgaaaaattatttatgcatgttttggattaattgaagacgtagcatctaaactcttta 219  Q
    |||||||||||||  |||||||||||| |||| || ||||| ||| |||||||| ||||||    
T  30821344 ttttgaaaaattaagtatgcatgtttttgatttatggaagaagtaacatctaaattcttta 30821284  T

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