View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14854_high_29 (Length: 251)
Name: NF14854_high_29
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_high_29 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 8722801 - 8722569
Alignment:
| Q |
19 |
atattgatacaaatcaaaacaaaacatcaacatgctcaagagattctgcaaattcaaagagaagagttgaaaaatgttgcaaacttgatattaccaaatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8722801 |
atattgatacaaatcaaaacaaaacatcaacatgctcaagagattctgcaaattcaaagagaagagttgaaaaatgttgcaaacttgatattaccaaatc |
8722702 |
T |
|
| Q |
119 |
aaagaactatggtactacatcaaaacacaagaaaataaaacttgaaggcaacaacaattttgaagatgaagaaggtgacaaagttatatttgtttcaatg |
218 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8722701 |
aaagaagtatggtagtacatcaaaacacaagaaaataaaacttgaaggcaacagcaattttgaagatgaagaaggtgacgaagttatatttgtttcaatg |
8722602 |
T |
|
| Q |
219 |
acaaagtcaagaagcaaaggaaagttggataat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
8722601 |
acaaagtcaagaagcaaaggaaagttggataat |
8722569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 8594431 - 8594379
Alignment:
| Q |
199 |
aagttatatttgtttcaatgacaaagtcaagaagcaaaggaaagttggataat |
251 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
8594431 |
aagttatatttgcttcaaagacaaagtcaagaagcaaaggaaaattggataat |
8594379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 21238084 - 21238202
Alignment:
| Q |
19 |
atattgatacaaatcaaaacaaaacatcaacatgctcaagagattctgcaaattca---aagagaagagttgaaaaatgttgcaaacttgatattaccaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
21238084 |
atattgatacaaatcaaaacaaaacatcaacatgctcaagagattctgcaaattcaaagaagagaagagttgaaaaatgttgtaaactggatattaccaa |
21238183 |
T |
|
| Q |
116 |
atcaaagaactatggtact |
134 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
21238184 |
atcaaagaactatcgtact |
21238202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 21238893 - 21238999
Alignment:
| Q |
145 |
acaagaaaataaaacttgaaggcaacaacaattttgaagatgaagaaggtgacaaagttatatttgtttcaatgacaaagtcaagaagcaaaggaaagtt |
244 |
Q |
| |
|
||||||||||||||||||||| ||| |||| |||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21238893 |
acaagaaaataaaacttgaagccaataacattttttaagatgaagaagaagaggaagttatatttgtttcaatgacaaagtcaagaagcaaaggaatgtt |
21238992 |
T |
|
| Q |
245 |
ggataat |
251 |
Q |
| |
|
||||||| |
|
|
| T |
21238993 |
ggataat |
21238999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 1778580 - 1778497
Alignment:
| Q |
75 |
aagagaagagttgaaaaatgttgcaaacttgatattaccaaatcaaagaactatggtactacatcaaaacacaagaaaataaaa |
158 |
Q |
| |
|
||||||| ||||||||||| ||| | |||||||||||| |||||||||||| || | |||||||||||||||| |||| |||| |
|
|
| T |
1778580 |
aagagaatagttgaaaaatattgtagacttgatattacaaaatcaaagaacaatcatgctacatcaaaacacaataaaagaaaa |
1778497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University