View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14854_high_3 (Length: 643)

Name: NF14854_high_3
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14854_high_3
NF14854_high_3
[»] chr2 (21 HSPs)
chr2 (265-640)||(26317246-26317602)
chr2 (72-184)||(26317108-26317220)
chr2 (528-640)||(7708871-7708984)
chr2 (2-56)||(13553262-13553316)
chr2 (2-66)||(40951309-40951373)
chr2 (2-69)||(10288271-10288338)
chr2 (2-61)||(19668080-19668139)
chr2 (2-61)||(5167635-5167694)
chr2 (2-61)||(30856926-30856985)
chr2 (1-67)||(15283136-15283202)
chr2 (24-61)||(13553310-13553347)
chr2 (1-66)||(43650435-43650500)
chr2 (5-61)||(305861-305916)
chr2 (2-66)||(42251808-42251872)
chr2 (2-61)||(4842412-4842471)
chr2 (4-66)||(21805674-21805736)
chr2 (21-66)||(19637365-19637410)
chr2 (21-66)||(19835958-19836003)
chr2 (1-65)||(42607423-42607488)
chr2 (2-66)||(3091860-3091924)
chr2 (21-61)||(11126601-11126641)
[»] chr3 (24 HSPs)
chr3 (2-61)||(462294-462353)
chr3 (2-67)||(1901813-1901878)
chr3 (2-67)||(1911259-1911324)
chr3 (1-67)||(32795954-32796020)
chr3 (2-66)||(7867597-7867661)
chr3 (2-67)||(31326827-31326892)
chr3 (2-66)||(25959430-25959494)
chr3 (2-61)||(981589-981648)
chr3 (2-61)||(29800442-29800501)
chr3 (2-67)||(34607806-34607871)
chr3 (510-618)||(22735104-22735212)
chr3 (2-66)||(44593085-44593149)
chr3 (2-66)||(50294012-50294076)
chr3 (11-57)||(16267804-16267850)
chr3 (2-59)||(43409260-43409317)
chr3 (2-66)||(46473247-46473311)
chr3 (2-65)||(3483238-3483301)
chr3 (512-618)||(17263444-17263551)
chr3 (2-61)||(41717382-41717441)
chr3 (17-66)||(32981009-32981058)
chr3 (2-66)||(1295451-1295515)
chr3 (2-66)||(11173569-11173633)
chr3 (2-30)||(18181560-18181588)
chr3 (30-66)||(47773866-47773902)
[»] chr5 (20 HSPs)
chr5 (2-71)||(91334-91403)
chr5 (2-66)||(24792571-24792635)
chr5 (2-61)||(9636051-9636110)
chr5 (1-68)||(36581353-36581420)
chr5 (17-68)||(15639519-15639570)
chr5 (533-618)||(18892307-18892392)
chr5 (2-59)||(19437376-19437433)
chr5 (1-61)||(7144693-7144753)
chr5 (1-66)||(28904110-28904179)
chr5 (1-66)||(28940505-28940574)
chr5 (2-61)||(582762-582821)
chr5 (530-633)||(3613449-3613552)
chr5 (2-52)||(13734262-13734312)
chr5 (4-68)||(38387832-38387895)
chr5 (2-65)||(36624437-36624500)
chr5 (2-65)||(39595393-39595456)
chr5 (532-633)||(22626260-22626361)
chr5 (7-67)||(5698215-5698275)
chr5 (2-66)||(6865675-6865739)
chr5 (30-66)||(20040921-20040957)
[»] chr4 (16 HSPs)
chr4 (2-66)||(46567048-46567112)
chr4 (11-66)||(11997778-11997833)
chr4 (2-66)||(12638943-12639007)
chr4 (2-61)||(16508870-16508929)
chr4 (510-603)||(21618797-21618890)
chr4 (2-71)||(28676037-28676106)
chr4 (9-61)||(26440789-26440841)
chr4 (2-66)||(55510978-55511042)
chr4 (2-69)||(37977234-37977301)
chr4 (17-67)||(54801131-54801181)
chr4 (1-61)||(33438163-33438223)
chr4 (2-61)||(23836993-23837052)
chr4 (7-61)||(40847491-40847545)
chr4 (533-633)||(2187070-2187168)
chr4 (1-65)||(5234360-5234424)
chr4 (29-61)||(32621763-32621795)
[»] chr1 (23 HSPs)
chr1 (2-66)||(27352749-27352813)
chr1 (532-635)||(24107577-24107679)
chr1 (2-66)||(48872498-48872562)
chr1 (7-66)||(51172195-51172254)
chr1 (510-618)||(37960072-37960180)
chr1 (2-57)||(30530471-30530526)
chr1 (2-61)||(51339593-51339652)
chr1 (2-67)||(25061852-25061917)
chr1 (532-633)||(30699876-30699977)
chr1 (1-66)||(36930644-36930709)
chr1 (2-67)||(44730763-44730828)
chr1 (1-66)||(49621479-49621544)
chr1 (2-61)||(4604648-4604707)
chr1 (2-61)||(25098684-25098740)
chr1 (529-633)||(11915937-11916040)
chr1 (1-66)||(16658557-16658626)
chr1 (2-66)||(50527945-50528009)
chr1 (21-64)||(5043186-5043229)
chr1 (2-61)||(43611975-43612034)
chr1 (2-67)||(40595941-40596006)
chr1 (2-61)||(32821754-32821813)
chr1 (2-61)||(45349990-45350049)
chr1 (17-66)||(30687186-30687235)
[»] chr6 (9 HSPs)
chr6 (2-61)||(8173205-8173264)
chr6 (532-616)||(25329428-25329512)
chr6 (532-616)||(26198348-26198432)
chr6 (2-66)||(16533147-16533212)
chr6 (2-66)||(32730008-32730072)
chr6 (532-618)||(6058949-6059034)
chr6 (529-618)||(10587268-10587357)
chr6 (2-66)||(21443807-21443871)
chr6 (21-61)||(25567386-25567426)
[»] scaffold0166 (1 HSPs)
scaffold0166 (2-66)||(34954-35018)
[»] scaffold0002 (1 HSPs)
scaffold0002 (2-66)||(440837-440901)
[»] chr7 (16 HSPs)
chr7 (2-66)||(2469811-2469875)
chr7 (2-66)||(43079517-43079581)
chr7 (1-68)||(9031325-9031392)
chr7 (2-61)||(18157078-18157137)
chr7 (2-61)||(27688756-27688815)
chr7 (534-633)||(38652360-38652459)
chr7 (2-61)||(43107731-43107790)
chr7 (2-66)||(25940555-25940619)
chr7 (2-57)||(30941296-30941351)
chr7 (533-638)||(9895319-9895424)
chr7 (528-618)||(15125872-15125960)
chr7 (2-53)||(43444747-43444798)
chr7 (4-66)||(35072133-35072195)
chr7 (2-68)||(6655503-6655569)
chr7 (4-66)||(35098475-35098537)
chr7 (40-68)||(41878150-41878178)
[»] chr8 (11 HSPs)
chr8 (2-61)||(1796602-1796661)
chr8 (534-618)||(32027272-32027356)
chr8 (2-61)||(5782907-5782966)
chr8 (2-67)||(6005063-6005128)
chr8 (2-61)||(36740431-36740490)
chr8 (17-66)||(12045541-12045590)
chr8 (2-59)||(44380509-44380566)
chr8 (2-61)||(32725675-32725734)
chr8 (21-66)||(69514-69559)
chr8 (2-67)||(21273597-21273662)
chr8 (33-61)||(20853069-20853097)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 265 - 640
Target Start/End: Original strand, 26317246 - 26317602
Alignment:
Q  265 catagtttttaattgtctaagtgtcaatatgtctctagatgataaatgtggtaatgctcaatatattgaaacacgatgaatgtctatgtgtatgccgtta 364  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||| |||    
T  26317246 catagttcttaaatgtctaagtgtcaatatgtctctagatgataaatgtggtaatgctcaatatattgaaacatgatgaatgtctatgt--atgccatta 26317343  T
Q  365 tgcaaactaggagaatatttgtgatgctcttcttacttataagttatcttacatgattttcgactactcatgcttcaatgtttgtatgtgcacgtttgat 464  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26317344 tgcaaactatgagaatatttgtgaagctcttcttacttataagttatcttacatgattttcgactactcatccttcaatgtttgtatgtgcacgtttgat 26317443  T
Q  465 tttgcataatgacatcacaacattcactaagtgactatcatatcttgtggaatgagcatagctgcaggttatttaagca-taaagaaaacaccatgcttc 563  Q
    |||| |||| |||||||||||||||||||||||||||||||||  |||                  |||||||||||||  ||||||||||| || |||     
T  26317444 tttgtataacgacatcacaacattcactaagtgactatcatattatgt------------------ggttatttaagcagaaaagaaaacactatacttt 26317525  T
Q  564 agttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagttaattttatttttggtattcat 640  Q
    ||||||||||||||||||||||||||||||||| || | |||||| |||||||||||||||| |||||| |||||||    
T  26317526 agttattggaaaaggttaagtcatattctttatagtaggtgaaagttaagaaagttaattttgtttttgctattcat 26317602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 26317108 - 26317220
Alignment:
Q  72 tctcacatttttcaagttgatctcacaggttaattgtctccacacctttatgtgttaatatgcttataattgtcgccacatgattaaatcctcgtatgtt 171  Q
    |||||||| || ||||||||||||||| ||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26317108 tctcacatgttccaagttgatctcacatgttaattatttacacacctctatgtgttaatatgcttataattgtcgccacatgattaaatcctcatatgtt 26317207  T
Q  172 tctatatgataat 184  Q
    |||||||||||||    
T  26317208 tctatatgataat 26317220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 528 - 640
Target Start/End: Complemental strand, 7708984 - 7708871
Alignment:
Q  528 gcaggttatttaagcataaagaaaacaccatgcttcagttattggaaaa-ggttaagtcatattctttatggtggctgaaagctaagaaagttaatttta 626  Q
    |||||||||||||||| | ||||||  | ||| ||||| |||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||||     
T  7708984 gcaggttatttaagcaaagagaaaattctatgattcagatattggaaaaaggttaagtcattgtctttatggtggcttaaagctaagaaagttaattttg 7708885  T
Q  627 tttttggtattcat 640  Q
    ||||||||||||||    
T  7708884 tttttggtattcat 7708871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 13553262 - 13553316
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaata 56  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  13553262 aaaagagagaaaagaaagattgtcaaataggttgtaccaaatggttgttcaaata 13553316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 40951309 - 40951373
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||||| ||||||||||||||||||||||| |||| ||||||| |||||||| ||||    
T  40951309 aaaagagagaaaaggaaggttgtcaaataggttgtacctaatggttgttcatatatcattgctct 40951373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 10288271 - 10288338
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactctata 69  Q
    |||||||||||||| ||| ||||||||||| ||||||||||| ||| |||||||||| ||||||||||    
T  10288271 aaaagagagaaaaggaagattgtcaaatagattgtaccaaataattattcaaatatctttactctata 10288338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 19668139 - 19668080
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||| |||||| |||||||||||||| |||||| ||||||||||||||||    
T  19668139 aaaagagagaaaaggaaggttatcaaataggttgtatcaaatggttgttcaaatatcatt 19668080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 5167694 - 5167635
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||  ||||||||||| |||||| ||||||||| ||||||||||||||||    
T  5167694 aaaagagagaaaatgaaggttgtcaagtaggttataccaaatggttgttcaaatatcatt 5167635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 30856926 - 30856985
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||  ||||||||||||||  |||||||||||| ||||||| ||||||||    
T  30856926 aaaagagagaaaaagaaggttgtcaaataaattgtaccaaatggttgttcatatatcatt 30856985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 15283202 - 15283136
Alignment:
Q  1 aaaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactcta 67  Q
    ||||| ||||||||| ||||||||||||||  |||||| ||||| || ||||||||||||| |||||    
T  15283202 aaaaaaagagaaaaggaaggttgtcaaataaattgtacgaaatggttattcaaatatcattgctcta 15283136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 13553310 - 13553347
Alignment:
Q  24 tcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  13553310 tcaaataggttgtaccaaatggttgttcaaatatcatt 13553347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 43650500 - 43650435
Alignment:
Q  1 aaaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||||| | |  |||||| ||| |||||| |||||||||||| |||||||||||||||    
T  43650500 aaaaagagagaaaaaagaaattgtcacataagttgtatcaaatgattgtttaaatatcattactct 43650435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 305916 - 305861
Alignment:
Q  5 agagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||| |||| |||||| | || |||||||||||||||||||||||||||||    
T  305916 agagagaaaaaaaag-ttgtcataaagattgtaccaaatgattgttcaaatatcatt 305861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 42251872 - 42251808
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    ||||||||||||| | | ||||||| ||| ||||| ||||||||||||| |||||||| ||||||    
T  42251872 aaaagagagaaaaaagaagttgtcacataagttgttccaaatgattgtttaaatatcactactct 42251808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 4842471 - 4842412
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||| ||||||||  ||||||||||||||||||||| |||||| | ||||| ||||||||    
T  4842471 aaaaaagagaaaatgaaggttgtcaaataggttgtatcaaatggtagttcatatatcatt 4842412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 21805736 - 21805674
Alignment:
Q  4 aagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    ||||||||| |  |||||||||||| || |||||||||||| ||||| |||||||||| ||||    
T  21805736 aagagagaataagaaggttgtcaaaaagattgtaccaaatggttgttaaaatatcattgctct 21805674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 19637365 - 19637410
Alignment:
Q  21 ttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||| | ||||||||||||||| |||||||||||||||| ||||    
T  19637365 ttgtcataaaggttgtaccaaatggttgttcaaatatcattgctct 19637410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 19835958 - 19836003
Alignment:
Q  21 ttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||| | ||||||||||||||| |||||||||||||||| ||||    
T  19835958 ttgtcataaaggttgtaccaaatggttgttcaaatatcattgctct 19836003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 42607488 - 42607423
Alignment:
Q  1 aaaaagagagaaaagaaaggttgtcaaataggttgt-accaaatgattgttcaaatatcattactc 65  Q
    ||||||||||||||| |||||||||| | | ||||| | || |||||||| |||||||||||||||    
T  42607488 aaaaagagagaaaaggaaggttgtcacaaaagttgtcatcatatgattgtacaaatatcattactc 42607423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 3091860 - 3091924
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    ||||||||||||| | | ||||||| | | |||||| ||||| ||||||||||||||| ||||||    
T  3091860 aaaagagagaaaaaagaagttgtcacaaaagttgtatcaaataattgttcaaatatcactactct 3091924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 11126601 - 11126641
Alignment:
Q  21 ttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||| | |||||| |||||||||||||||||||||||||    
T  11126601 ttgtcataaaggttgaaccaaatgattgttcaaatatcatt 11126641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 7e-23; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 462353 - 462294
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  462353 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 462294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 1901878 - 1901813
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactcta 67  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  1901878 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatattattgctcta 1901813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 1911324 - 1911259
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactcta 67  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  1911324 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatattattgctcta 1911259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 32795954 - 32796020
Alignment:
Q  1 aaaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactcta 67  Q
    ||||||||||||||  || ||||||||||||||||||||||||| |||||||||||||||| |||||    
T  32795954 aaaaagagagaaaatgaaagttgtcaaataggttgtaccaaatggttgttcaaatatcattgctcta 32796020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 7867661 - 7867597
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||||  ||||||||||||||| |||||||||||| |||||||||||||||| ||||    
T  7867661 aaaagagagaaaatgaaggttgtcaaatagattgtaccaaatggttgttcaaatatcattgctct 7867597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 31326827 - 31326892
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactcta 67  Q
    |||||||||||||  ||| ||||||||||| |||||||||||| |||||||||||||||| |||||    
T  31326827 aaaagagagaaaatgaagattgtcaaatagattgtaccaaatggttgttcaaatatcattgctcta 31326892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 25959494 - 25959430
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||||  || |||||||||||||||||| |||||| |||||||||||||||| ||||    
T  25959494 aaaagagagaaaatgaaagttgtcaaataggttgtatcaaatggttgttcaaatatcattgctct 25959430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 981589 - 981648
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||  |||||||||||||||| ||||| ||||| ||||||||||||||||    
T  981589 aaaagagagaaaatgaaggttgtcaaataggctgtactaaatggttgttcaaatatcatt 981648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 29800501 - 29800442
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||  ||| || |||||||||||||||||||| |||||||||||||||||    
T  29800501 aaaagagagaaaaagaagattttcaaataggttgtaccaaataattgttcaaatatcatt 29800442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 34607871 - 34607806
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactcta 67  Q
    |||||||||||||  ||||||||||||||| |||||||||||  ||||||||||||| || |||||    
T  34607871 aaaagagagaaaatgaaggttgtcaaatagattgtaccaaatagttgttcaaatatcgttgctcta 34607806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 510 - 618
Target Start/End: Original strand, 22735104 - 22735212
Alignment:
Q  510 tgtggaatgagcatagctgcaggttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagc 609  Q
    |||||||||||| || |  || |||||||||||| |||||||| |  ||| |||| ||||| ||||||||||| || ||||||||||||||| |  |||     
T  22735104 tgtggaatgagcgtaacaacatgttatttaagcagaaagaaaatattatgtttcaattattagaaaaggttaaatcttattctttatggtggattcaagt 22735203  T
Q  610 taagaaagt 618  Q
    |||||||||    
T  22735204 taagaaagt 22735212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 44593085 - 44593149
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||| ||||||||  |||||||||||| | |||||||||||||||| ||||||||||||| ||||    
T  44593085 aaaatagagaaaatgaaggttgtcaaaaaagttgtaccaaatgattattcaaatatcattgctct 44593149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 50294076 - 50294012
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||||  || ||||||||||| ||||||||||||| ||||| |||||||||| ||||    
T  50294076 aaaagagagaaaaagaaagttgtcaaataagttgtaccaaatggttgttaaaatatcattgctct 50294012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 16267850 - 16267804
Alignment:
Q  11 aaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatat 57  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||||    
T  16267850 aaaaaaaaggttgtcaaaaatgttgtaccaaatgattgttcaaatat 16267804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 43409317 - 43409260
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatca 59  Q
    ||||||||||||| |||| ||||||||||| || ||| |||| |||||||||||||||    
T  43409317 aaaagagagaaaaaaaagattgtcaaatagattatactaaataattgttcaaatatca 43409260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 46473247 - 46473311
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    ||||||||||||| | | ||||||| | | |||||| |||||| |||||||||||||||||||||    
T  46473247 aaaagagagaaaaaagaagttgtcataaaagttgtatcaaatggttgttcaaatatcattactct 46473311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 3483238 - 3483301
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactc 65  Q
    ||||||||||||| ||| ||||||| | | |||||| |||||||||||||||||| || |||||    
T  3483238 aaaagagagaaaaaaaaagttgtcacagatgttgtatcaaatgattgttcaaataacactactc 3483301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 618
Target Start/End: Original strand, 17263444 - 17263551
Alignment:
Q  512 tggaatgagcatagctgcaggttatttaagcataaagaaaacaccatgcttcagttattggaaaag-gttaagtcatattctttatggtggctgaaagct 610  Q
    |||||||||| || | | ||||||||||| || ||| |||| || ||| |||| ||||| |||||  |||||||  ||||||||||||||||| ||||||    
T  17263444 tggaatgagcgtaacaggaggttatttaaacagaaataaaatactatgtttcaattattagaaaaaagttaagttgtattctttatggtggcttaaagct 17263543  T
Q  611 aagaaagt 618  Q
    ||| ||||    
T  17263544 aaggaagt 17263551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 41717382 - 41717441
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||  ||| ||||||||||| || ||||||||| ||| ||||||||||||    
T  41717382 aaaagagagaaaaagaagattgtcaaatagattataccaaatggttgatcaaatatcatt 41717441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 32981058 - 32981009
Alignment:
Q  17 aaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||| |  |||||||||||| |||||||||||||||| ||||    
T  32981058 aaggttgtcaaaaaatttgtaccaaatggttgttcaaatatcattgctct 32981009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 1295451 - 1295515
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||| ||||||  ||||||||||||   |||||| |||||| |||||||||||||||| ||||    
T  1295451 aaaagatagaaaaagaaggttgtcaaaattgttgtagcaaatggttgttcaaatatcattgctct 1295515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 11173569 - 11173633
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    ||||||||||||| | | ||||||| | | |||||| |||||| |||||||||||| ||||||||    
T  11173569 aaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatattattactct 11173633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 30
Target Start/End: Original strand, 18181560 - 18181588
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaata 30  Q
    |||||||||||||||||||||||||||||    
T  18181560 aaaagagagaaaagaaaggttgtcaaata 18181588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 47773902 - 47773866
Alignment:
Q  30 aggttgtaccaaatgattgttcaaatatcattactct 66  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  47773902 aggttgtaccaaatggttgttcaaatatgattactct 47773866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 91334 - 91403
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactctatata 71  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||    
T  91334 aaaagagagaaaagaaaggttgtcaaataggttgtatcaaatggttgttcaaatatcattgctctttata 91403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 24792571 - 24792635
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  24792571 aaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 24792635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 9636110 - 9636051
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||    
T  9636110 aaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcatt 9636051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 36581420 - 36581353
Alignment:
Q  1 aaaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactctat 68  Q
    ||||||||| ||||  |||||||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  36581420 aaaaagagaaaaaatgaaggttgtcaaataggttgtacaaaatggttgttcaaatatcattgctctat 36581353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 15639519 - 15639570
Alignment:
Q  17 aaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactctat 68  Q
    |||||||||||| ||||||||||||||| |||||||||||||||| ||||||    
T  15639519 aaggttgtcaaaaaggttgtaccaaatggttgttcaaatatcattgctctat 15639570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 533 - 618
Target Start/End: Original strand, 18892307 - 18892392
Alignment:
Q  533 ttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagt 618  Q
    ||||||||||| |||||||| || ||  |||| ||||| ||||| |||||| | ||||||||||||||||| |||| |||||||||    
T  18892307 ttatttaagcagaaagaaaatactatttttcacttattagaaaaagttaagccgtattctttatggtggcttaaagttaagaaagt 18892392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 19437376 - 19437433
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatca 59  Q
    ||||||||||||||||||||||||||| | ||||||| ||||  ||||||||||||||    
T  19437376 aaaagagagaaaagaaaggttgtcaaaaatgttgtactaaatagttgttcaaatatca 19437433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7144693 - 7144753
Alignment:
Q  1 aaaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    ||||||||||||||  |||||||||||| |||||||| |||||| ||| ||||||||||||    
T  7144693 aaaaagagagaaaaagaaggttgtcaaaaaggttgtatcaaatggttgctcaaatatcatt 7144753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 28904110 - 28904179
Alignment:
Q  1 aaaaagagagaaaagaaaggttgtcaaataggttgtaccaaa----tgattgttcaaatatcattactct 66  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    || |||||||||||||||| ||||    
T  28904110 aaaaaaagagaaaaggaaggttgtcaaataggttgtaccaaataattggttgttcaaatatcattgctct 28904179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 28940505 - 28940574
Alignment:
Q  1 aaaaagagagaaaagaaaggttgtcaaataggttgtaccaaa----tgattgttcaaatatcattactct 66  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    || |||||||||||||||| ||||    
T  28940505 aaaaaaagagaaaaggaaggttgtcaaataggttgtaccaaataattggttgttcaaatatcattgctct 28940574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 582821 - 582762
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||| ||  |||||||||||| |  |||||||||||||||||||||||||||||    
T  582821 aaaagagagagaaagaaggttgtcaaaaatcttgtaccaaatgattgttcaaatatcatt 582762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 530 - 633
Target Start/End: Original strand, 3613449 - 3613552
Alignment:
Q  530 aggttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagttaattttattt 629  Q
    |||||||||||||| |||| ||| || ||| |||| |||||  |||| ||| ||||  ||||||||||||||||  ||||||||||||||  |||| |||    
T  3613449 aggttatttaagcagaaaggaaatactatgtttcaattattataaaaagtttagtcgcattctttatggtggcttcaagctaagaaagtttgttttgttt 3613548  T
Q  630 ttgg 633  Q
    ||||    
T  3613549 ttgg 3613552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 13734312 - 13734262
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttca 52  Q
    |||||||||||||| || |||||||||||| |||||||||||| |||||||    
T  13734312 aaaagagagaaaaggaaagttgtcaaatagattgtaccaaatggttgttca 13734262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 38387832 - 38387895
Alignment:
Q  4 aagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactctat 68  Q
    ||||||||||| |||  |||||| | ||||||||||||||| |||||||||||||||| ||||||    
T  38387832 aagagagaaaaaaaaa-ttgtcataaaggttgtaccaaatggttgttcaaatatcattgctctat 38387895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 36624437 - 36624500
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactc 65  Q
    |||||||||||||  ||  ||||||||||  ||||| |||||| ||||||||||||||||||||    
T  36624437 aaaagagagaaaatgaaaattgtcaaataaattgtatcaaatgcttgttcaaatatcattactc 36624500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 39595393 - 39595456
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactc 65  Q
    ||||||||||||| | | ||||||| | | |||||| |||||| ||||||||||||||||||||    
T  39595393 aaaagagagaaaaaagaagttgtcacaaaagttgtatcaaatggttgttcaaatatcattactc 39595456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 633
Target Start/End: Original strand, 22626260 - 22626361
Alignment:
Q  532 gttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagttaattttattttt 631  Q
    |||||||||||| |||||||| |  ||| |||| ||||| ||||| |||||||| ||||||||   |||| | |||| ||||||||||  |||| |||||    
T  22626260 gttatttaagcagaaagaaaataatatgtttcaattattagaaaaagttaagtcgtattcttttatgtggtttaaagttaagaaagttcgttttgttttt 22626359  T
Q  632 gg 633  Q
    ||    
T  22626360 gg 22626361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 5698275 - 5698215
Alignment:
Q  7 agagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactcta 67  Q
    ||||||||  ||||||||||   | |||||||||||||||||||| ||||||||| |||||    
T  5698275 agagaaaaagaaggttgtcatgaaagttgtaccaaatgattgttctaatatcattgctcta 5698215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 6865739 - 6865675
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    ||||||||||||| ||| |||||||||||| || || |||||  |||||||||||| ||| ||||    
T  6865739 aaaagagagaaaataaaagttgtcaaatagattatatcaaatagttgttcaaatattattgctct 6865675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 20040921 - 20040957
Alignment:
Q  30 aggttgtaccaaatgattgttcaaatatcattactct 66  Q
    ||||||||||||||| |||||||||||||||| ||||    
T  20040921 aggttgtaccaaatggttgttcaaatatcattgctct 20040957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 46567048 - 46567112
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  46567048 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 46567112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 11997778 - 11997833
Alignment:
Q  11 aaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||    
T  11997778 aaaagaaaggatgtcaaataggttgtaccaaatggttgttcaaatatcattactct 11997833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 12638943 - 12639007
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||||  ||||||||||||||||||||| |||||  |||||||||||||||| ||||    
T  12638943 aaaagagagaaaatgaaggttgtcaaataggttgtaacaaatagttgttcaaatatcatttctct 12639007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 16508929 - 16508870
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||  ||||||||||| ||||||||||||||| |||||||||||| ||||    
T  16508929 aaaagagagaaaatgaaggttgtcaagtaggttgtaccaaattattgttcaaatagcatt 16508870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 510 - 603
Target Start/End: Original strand, 21618797 - 21618890
Alignment:
Q  510 tgtggaatgagcatagctgcaggttatttaagcataaagaaaacaccatgcttcagttattggaaaaggtta-agtcatattctttatggtggct 603  Q
    |||||||||||| || | |||||||||||||||| ||| |||| |||||| |||| ||||| ||||| |||| |||| |||||||||||||||||    
T  21618797 tgtggaatgagcgtaacagcaggttatttaagcagaaa-aaaataccatgtttcaattattagaaaaagttatagtcgtattctttatggtggct 21618890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 28676106 - 28676037
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactctatata 71  Q
    |||||||||||||  |||||||||||| ||||||||| ||||| ||||| |||||||||| ||| |||||    
T  28676106 aaaagagagaaaaagaaggttgtcaaaaaggttgtacaaaatggttgtttaaatatcattgctcaatata 28676037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 26440789 - 26440841
Alignment:
Q  9 agaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||| |||||||||||||||| |||||| |||||||| |||||||||||||    
T  26440789 agaaaataaaggttgtcaaatagattgtacaaaatgattcttcaaatatcatt 26440841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 55510978 - 55511042
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||| ||||||||| || ||| ||||||| ||||||||||||| |||||||||||||||| ||||    
T  55510978 aaaatagagaaaaggaaagttttcaaataagttgtaccaaatggttgttcaaatatcattgctct 55511042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 37977234 - 37977301
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactctata 69  Q
    ||||||||||||  |||  |||||||| | ||||||||||||| |||||||||||||||| |||||||    
T  37977234 aaaagagagaaagaaaaaattgtcaaaaatgttgtaccaaatggttgttcaaatatcattgctctata 37977301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 54801131 - 54801181
Alignment:
Q  17 aaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactcta 67  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||| |||||    
T  54801131 aaggttgtcaaataaattgtaccaaataattgttcaaatatcattgctcta 54801181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 33438163 - 33438223
Alignment:
Q  1 aaaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    ||||||||||||||  |||||| ||||| | ||||||||||||| ||||| ||||||||||    
T  33438163 aaaaagagagaaaatgaaggttatcaaaaaagttgtaccaaatggttgtttaaatatcatt 33438223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 23837052 - 23836993
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||  ||  || ||||||| ||||||||||||||||||| ||||||||||    
T  23837052 aaaagagagaaaaagaaaattatcaaataagttgtaccaaatgattgtttaaatatcatt 23836993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 40847491 - 40847545
Alignment:
Q  7 agagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    ||||||||  |||||||||||| |||||||  |||||| ||||||||||||||||    
T  40847491 agagaaaaagaaggttgtcaaaaaggttgtgtcaaatggttgttcaaatatcatt 40847545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 633
Target Start/End: Complemental strand, 2187168 - 2187070
Alignment:
Q  533 ttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagttaattttatttttg 632  Q
    ||||||||||| |||||||| || ||| |||| ||||| ||||| ||||||||  ||| ||||||||||||  ||| ||||||| ||  |||| ||||||    
T  2187168 ttatttaagcaaaaagaaaatactatgtttcaattattagaaaaagttaagtc--attttttatggtggcttcaagttaagaaaattccttttgtttttg 2187071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 5234424 - 5234360
Alignment:
Q  1 aaaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactc 65  Q
    |||||||||||||| |||  |||||| | | |||||| |||||| |||||||||||||| |||||    
T  5234424 aaaaagagagaaaaaaaaaattgtcacaaaagttgtatcaaatggttgttcaaatatcactactc 5234360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 32621763 - 32621795
Alignment:
Q  29 taggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||||| ||||||||||||||||    
T  32621763 taggttgtaccaaatggttgttcaaatatcatt 32621795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 27352749 - 27352813
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||    
T  27352749 aaaagagagaaaagaaaggttgtcgaataggttgtaccaaatggttgttcaaatatcattgctct 27352813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 532 - 635
Target Start/End: Complemental strand, 24107679 - 24107577
Alignment:
Q  532 gttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagttaattttattttt 631  Q
    |||||||||||| |||||||| |||||  |||| ||||||| ||| || |||| | |||||||||||||| ||||||||||||||| |||||||||||||    
T  24107679 gttatttaagcagaaagaaaataccatatttcatttattgggaaaagtcaagtta-attctttatggtggttgaaagctaagaaagctaattttattttt 24107581  T
Q  632 ggta 635  Q
    ||||    
T  24107580 ggta 24107577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 48872498 - 48872562
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||| ||||    
T  48872498 aaaagagagaaaaggaaggttgtcaaataggttgtatcaaatggttgttcaaatatcattgctct 48872562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 51172254 - 51172195
Alignment:
Q  7 agagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||    
T  51172254 agagaaaagaaagattgtcaaatagattgtaccaaatgattgttcaaatatcattgctct 51172195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 510 - 618
Target Start/End: Original strand, 37960072 - 37960180
Alignment:
Q  510 tgtggaatgagcatagctgcaggttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagc 609  Q
    |||||||||||| || |||||||||||||||||| ||| |||| || ||| || | ||||| ||||| ||||||||  ||||||||||||| ||  ||||    
T  37960072 tgtggaatgagcgtaactgcaggttatttaagcagaaaaaaaatactatgttttaattattagaaaaagttaagtcgcattctttatggtgtcttcaagc 37960171  T
Q  610 taagaaagt 618  Q
    |||||||||    
T  37960172 taagaaagt 37960180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 30530526 - 30530471
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatat 57  Q
    |||||||||||||| || ||||||||||||||||||||||||| ||||||||||||    
T  30530526 aaaagagagaaaaggaaagttgtcaaataggttgtaccaaatggttgttcaaatat 30530471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 51339652 - 51339593
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||  |||||||||||||||||||||||||||  ||||||||||||||||    
T  51339652 aaaagagagaaaatgaaggttgtcaaataggttgtaccaaatagttgttcaaatatcatt 51339593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 25061852 - 25061917
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactcta 67  Q
    |||||||||||||  ||||||||||||||| ||||| |||||| |||||||||||||||| |||||    
T  25061852 aaaagagagaaaaagaaggttgtcaaatagattgtatcaaatggttgttcaaatatcattgctcta 25061917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 532 - 633
Target Start/End: Original strand, 30699876 - 30699977
Alignment:
Q  532 gttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagttaattttattttt 631  Q
    |||||||||||| |||||||| || ||| |||| |||||  ||||| ||||||| |||||||||| ||||||  || ||||||||||  |||||||||||    
T  30699876 gttatttaagcagaaagaaaatactatgtttcaattattaaaaaagtttaagtcttattctttattgtggcttcaaactaagaaagtccattttattttt 30699975  T
Q  632 gg 633  Q
    ||    
T  30699976 gg 30699977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 36930709 - 36930644
Alignment:
Q  1 aaaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    ||||||||||||||  |||||||||||| ||||||||| ||||| |||||||||||||||| ||||    
T  36930709 aaaaagagagaaaaagaaggttgtcaaaaaggttgtacaaaatggttgttcaaatatcattgctct 36930644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 44730763 - 44730828
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactcta 67  Q
    |||| ||||||||  |||||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  44730763 aaaaaagagaaaaagaaggttgtcaaaaaggttgtaccaaatggttgttcaaatatcattgctcta 44730828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 49621479 - 49621544
Alignment:
Q  1 aaaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    ||||||||||||||  ||| ||||||||||| |||||||||||| |||||||||||||||| ||||    
T  49621479 aaaaagagagaaaatgaagattgtcaaatagattgtaccaaatggttgttcaaatatcattgctct 49621544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 4604648 - 4604707
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||  |||||||||||| ||||||||||||||  ||||||||||||||||    
T  4604648 aaaagagagaaaaagaaggttgtcaaacaggttgtaccaaatcgttgttcaaatatcatt 4604707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 25098740 - 25098684
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||| |||||||||||   |||||||||||||| ||||||||||||||||    
T  25098740 aaaagagagaaaaggaaggttgtcaa---ggttgtaccaaatggttgttcaaatatcatt 25098684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 529 - 633
Target Start/End: Complemental strand, 11916040 - 11915937
Alignment:
Q  529 caggttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagttaattttatt 628  Q
    ||||||||| ||||| |||||||| || ||| |||| |||||  |||| |||||||| ||||||||||||||| |  |||||||||||||   |||||||    
T  11916040 caggttattgaagcagaaagaaaatactatg-ttcaattattaaaaaatgttaagtcttattctttatggtggattcaagctaagaaagtccgttttatt 11915942  T
Q  629 tttgg 633  Q
    |||||    
T  11915941 tttgg 11915937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 16658557 - 16658626
Alignment:
Q  1 aaaaagagagaaaagaaaggttgtcaaataggttgtaccaaa----tgattgttcaaatatcattactct 66  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    || |||||||||||||||| ||||    
T  16658557 aaaaaaagagaaaaggaaggttgtcaaataggttgtaccaaataattggttgttcaaatatcattgctct 16658626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 50528009 - 50527945
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||||  ||||||||||||||| ||||| |||||| |||||||||||| ||| ||||    
T  50528009 aaaagagagaaaaagaaggttgtcaaatagattgtagcaaatggttgttcaaatatgattgctct 50527945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 5043186 - 5043229
Alignment:
Q  21 ttgtcaaataggttgtaccaaatgattgttcaaatatcattact 64  Q
    |||||||||| ||||||||||||| |||||||||||||||||||    
T  5043186 ttgtcaaataagttgtaccaaatggttgttcaaatatcattact 5043229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 43612034 - 43611975
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    ||||||||||| || ||| || ||||||||||||||||||||| ||| ||||||||||||    
T  43612034 aaaagagagaagaggaagattatcaaataggttgtaccaaatggttggtcaaatatcatt 43611975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 40596006 - 40595941
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactcta 67  Q
    ||||||||||||| ||   |||||||| |||||||| |||||| |||||||||||||||| |||||    
T  40596006 aaaagagagaaaaaaattattgtcaaaaaggttgtatcaaatggttgttcaaatatcattgctcta 40595941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 32821754 - 32821813
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||  || ||||||||||| ||| || |||||| ||||||||||||||||    
T  32821754 aaaagagagaaaatgaatgttgtcaaataagttttatcaaatggttgttcaaatatcatt 32821813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 45350049 - 45349990
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||| || |||| |||||||| || |||||||||||||||||| |||| |||||    
T  45350049 aaaagagagagaaaaaagattgtcaaaaagattgtaccaaatgattgttaaaatgtcatt 45349990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 30687186 - 30687235
Alignment:
Q  17 aaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||| |  |||||||||||| |||||||||||||||| ||||    
T  30687186 aaggttgtcaaaaaatttgtaccaaatggttgttcaaatatcattgctct 30687235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 8173264 - 8173205
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  8173264 aaaagagagaaaagaaaggttgtcaaataggttataccaaatggttgttcaaatatcatt 8173205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 532 - 616
Target Start/End: Complemental strand, 25329512 - 25329428
Alignment:
Q  532 gttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaa 616  Q
    |||||||||||| |||||||| || ||| |||| ||||| ||||| |||||||| ||||||||||||||||| ||| ||||||||    
T  25329512 gttatttaagcagaaagaaaatactatgtttcaattattagaaaaagttaagtcttattctttatggtggcttaaaactaagaaa 25329428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 532 - 616
Target Start/End: Original strand, 26198348 - 26198432
Alignment:
Q  532 gttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaa 616  Q
    |||||||||||| |||||||| || ||| |||| ||||| ||||| |||||||| ||||||||||||||||| ||| ||||||||    
T  26198348 gttatttaagcagaaagaaaatactatgtttcaattattagaaaaagttaagtcttattctttatggtggcttaaaactaagaaa 26198432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 16533212 - 16533147
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaa-tgattgttcaaatatcattactct 66  Q
    |||||||||||||| || ||||||||||||||| ||||||| ||||||||||||||||||| ||||    
T  16533212 aaaagagagaaaaggaaagttgtcaaataggttataccaaattgattgttcaaatatcattgctct 16533147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 32730008 - 32730072
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||||  || ||||||||||||||||||||||||| ||||||| |||||||| ||||    
T  32730008 aaaagagagaaaaagaatgttgtcaaataggttgtaccaaatggttgttcatatatcattgctct 32730072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 532 - 618
Target Start/End: Original strand, 6058949 - 6059034
Alignment:
Q  532 gttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagt 618  Q
    |||||||||||| |||||||| || ||| |||| ||||| |||||  ||||||| |||||||||||||||||  ||| |||||||||    
T  6058949 gttatttaagcagaaagaaaatactatgtttcaattattagaaaaa-ttaagtcgtattctttatggtggcttcaagataagaaagt 6059034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 529 - 618
Target Start/End: Original strand, 10587268 - 10587357
Alignment:
Q  529 caggttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagt 618  Q
    |||| ||||||| || |||||||| |  ||| |||| ||||| ||||| |||||||| |||||||||||||||||  ||||| |||||||    
T  10587268 caggctatttaaccagaaagaaaataatatgtttcaattattagaaaaagttaagtcgtattctttatggtggcttcaagcttagaaagt 10587357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 21443807 - 21443871
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||| ||||  ||||||||| ||||| |||||||||||  |||||||||||||||| ||||    
T  21443807 aaaagagataaaatgaaggttgtccaatagattgtaccaaatagttgttcaaatatcattgctct 21443871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 25567426 - 25567386
Alignment:
Q  21 ttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||| | ||||||||||||||| ||||||||||||||||    
T  25567426 ttgtcataaaggttgtaccaaatggttgttcaaatatcatt 25567386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 34954 - 35018
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  34954 aaaagagagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 35018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 440837 - 440901
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||||    
T  440837 aaaagagagaaaagaaagattgtcaaatagattgtaccaaatggttgttcaaatatcattgctct 440901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 2469811 - 2469875
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  2469811 aaaatagagaaaaggaaggttgtcaaataggttgtaccaaatggttgttcaaatatcattgctct 2469875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 43079581 - 43079517
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||||    
T  43079581 aaaagagagaaaagaaaggttgtcaaataagttttaccaaatggttgttcaaatatcattgctct 43079517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 9031325 - 9031392
Alignment:
Q  1 aaaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactctat 68  Q
    ||||||||||||||  ||||||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  9031325 aaaaagagagaaaatgaaggttgtcaaatagattgtaccaaatggttgttcaaatatcattgctctat 9031392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 18157137 - 18157078
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||    
T  18157137 aaaagagagaaaaggaaggttgtcaaataggttgtaccaaatagttgttcaaatatcatt 18157078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 27688756 - 27688815
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||| ||||||||||||||| ||||||||||| ||||| |||||||||||    
T  27688756 aaaagagagaaaaggaaggttgtcaaatagattgtaccaaataattgtacaaatatcatt 27688815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 534 - 633
Target Start/End: Original strand, 38652360 - 38652459
Alignment:
Q  534 tatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagttaattttatttttgg 633  Q
    |||||||||| |||||||| || ||| |||| ||||| ||||| |||||||| |||||||||||||| ||  ||| |||||||||  |||||||||||||    
T  38652360 tatttaagcagaaagaaaatactatgtttcaattattagaaaaagttaagtcgtattctttatggtgacttcaagttaagaaagtctattttatttttgg 38652459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 43107731 - 43107790
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||| ||||||| |||||||| ||||||||||||||||||| ||||||||||||||||    
T  43107731 aaaagaaagaaaaggaaggttgttaaataggttgtaccaaatggttgttcaaatatcatt 43107790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 25940619 - 25940555
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||||  ||||||||||||||| |||||||||||  |||||||||||||||| ||||    
T  25940619 aaaagagagaaaatgaaggttgtcaaatagattgtaccaaatagttgttcaaatatcattgctct 25940555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 30941296 - 30941351
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatat 57  Q
    |||| ||||||||| |||||||||||||||||||||| ||||| ||||||||||||    
T  30941296 aaaaaagagaaaaggaaggttgtcaaataggttgtactaaatggttgttcaaatat 30941351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 533 - 638
Target Start/End: Complemental strand, 9895424 - 9895319
Alignment:
Q  533 ttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagttaattttatttttg 632  Q
    ||||||||||| ||||||||    ||| |||| |||||| |||| |||||||| |||||||||| ||||||  |||| ||||||||  ||||| ||||||    
T  9895424 ttatttaagcagaaagaaaatgttatgtttcaattattgaaaaatgttaagtcttattctttatagtggcttcaagccaagaaagtccattttgtttttg 9895325  T
Q  633 gtattc 638  Q
    ||||||    
T  9895324 gtattc 9895319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 528 - 618
Target Start/End: Original strand, 15125872 - 15125960
Alignment:
Q  528 gcaggttatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagt 618  Q
    |||||||||||||||| |||  ||| || ||| |||| ||||| ||||| |||||||  ||||||||||||||||| |||| |||||||||    
T  15125872 gcaggttatttaagcagaaa--aaatactatgtttcaattattagaaaaagttaagttgtattctttatggtggcttaaagttaagaaagt 15125960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 2 - 53
Target Start/End: Original strand, 43444747 - 43444798
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaa 53  Q
    ||||| |||||||  |||||||||||||||||||||||||||| ||||||||    
T  43444747 aaaagggagaaaatgaaggttgtcaaataggttgtaccaaatggttgttcaa 43444798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 35072195 - 35072133
Alignment:
Q  4 aagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||  ||| |||||||| ||||||||||||||  |||||||||||||||| ||||    
T  35072195 aagagagaaaatgaagattgtcaaaaaggttgtaccaaatagttgttcaaatatcattgctct 35072133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 6655569 - 6655503
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactctat 68  Q
    |||||||| ||||  ||| |||||||| || |||||||||||| ||||| |||||||||| ||||||    
T  6655569 aaaagagataaaaagaagattgtcaaaaagattgtaccaaatggttgtttaaatatcattgctctat 6655503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 35098537 - 35098475
Alignment:
Q  4 aagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||  ||| |||||||| ||||||||||||||  |||||||| ||||||| ||||    
T  35098537 aagagagaaaatgaagattgtcaaaaaggttgtaccaaatagttgttcaattatcattgctct 35098475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 68
Target Start/End: Original strand, 41878150 - 41878178
Alignment:
Q  40 aaatgattgttcaaatatcattactctat 68  Q
    |||||||||||||||||||||||||||||    
T  41878150 aaatgattgttcaaatatcattactctat 41878178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 1796602 - 1796661
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||    
T  1796602 aaaagagagaaaaggaaggttgtcaaataggttgtaacaaatggttgttcaaatatcatt 1796661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 534 - 618
Target Start/End: Complemental strand, 32027356 - 32027272
Alignment:
Q  534 tatttaagcataaagaaaacaccatgcttcagttattggaaaaggttaagtcatattctttatggtggctgaaagctaagaaagt 618  Q
    |||||||||| |||||||| || || ||||||||||| |||||||| ||||| ||||||||||||| |||  |||||||||||||    
T  32027356 tatttaagcagaaagaaaatactattcttcagttattagaaaaggtcaagtcttattctttatggtagcttcaagctaagaaagt 32027272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 5782907 - 5782966
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||  || ||||||||||||||||||||||||| ||||||||||||||||    
T  5782907 aaaagagagaaaatgaaagttgtcaaataggttgtaccaaatggttgttcaaatatcatt 5782966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 6005063 - 6005128
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactcta 67  Q
    |||||||||||||| || ||||||||||| ||||||||||||| ||||||||| |||||| |||||    
T  6005063 aaaagagagaaaaggaaagttgtcaaataagttgtaccaaatggttgttcaaacatcattgctcta 6005128  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 36740431 - 36740490
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||  ||||||||||||||| ||||| |||||| ||||||||||||||||    
T  36740431 aaaagagagaaaatgaaggttgtcaaatagattgtatcaaatggttgttcaaatatcatt 36740490  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 12045590 - 12045541
Alignment:
Q  17 aaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    |||||||||||| ||||| ||||||||| |||||||||||||||| ||||    
T  12045590 aaggttgtcaaaaaggttataccaaatggttgttcaaatatcattgctct 12045541  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 44380566 - 44380509
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatca 59  Q
    |||| |||||||||||||||||||||| ||||||||| ||||  ||||| ||||||||    
T  44380566 aaaaaagagaaaagaaaggttgtcaaaaaggttgtactaaatagttgtttaaatatca 44380509  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 32725734 - 32725675
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||| ||||||||||||||| || ||| ||||  ||||| ||||||||||    
T  32725734 aaaagagagaaaaggaaggttgtcaaatagattatactaaatagttgtttaaatatcatt 32725675  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 69559 - 69514
Alignment:
Q  21 ttgtcaaataggttgtaccaaatgattgttcaaatatcattactct 66  Q
    ||||||||||||||||| |||||| ||||||||||| |||| ||||    
T  69559 ttgtcaaataggttgtatcaaatggttgttcaaatagcattgctct 69514  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 21273662 - 21273597
Alignment:
Q  2 aaaagagagaaaagaaaggttgtcaaataggttgtaccaaatgattgttcaaatatcattactcta 67  Q
    ||||||||||||||||| ||||||| | | ||||||  ||||  |||||||||||||| |||||||    
T  21273662 aaaagagagaaaagaaaagttgtcacaaaagttgtatgaaatagttgttcaaatatcactactcta 21273597  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 20853069 - 20853097
Alignment:
Q  33 ttgtaccaaatgattgttcaaatatcatt 61  Q
    |||||||||||||||||||||||||||||    
T  20853069 ttgtaccaaatgattgttcaaatatcatt 20853097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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