View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14854_high_31 (Length: 239)
Name: NF14854_high_31
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 17957618 - 17957819
Alignment:
| Q |
1 |
ccgctttctacaacatcaaacgtcaaattataagtcttcgtgcgcttaactcaaatcgtctggatattacataatatatgtaagaattagggtttaaatc |
100 |
Q |
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| T |
17957618 |
ccgctttctacaacatcaaatgtcaaattataagtcttcgtgcgcttaactcaaatcatctggatattacataatatatgtaagaattagggtttaaatc |
17957717 |
T |
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| Q |
101 |
tcggacactccacttattcacattagaaactaannnnnnnagctattatgttacttgacctg-aaaattatgtcaaattaacacgtataaaatcatatat |
199 |
Q |
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| T |
17957718 |
tcggatactccacttatttactttagaaactaa-ttttttagctattatattacttgacctgaaaaattatgtcaaattaactcgtatataatcatatat |
17957816 |
T |
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| Q |
200 |
acg |
202 |
Q |
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||| |
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| T |
17957817 |
acg |
17957819 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Complemental strand, 37914734 - 37914699
Alignment:
| Q |
90 |
gggtttaaatctcggacactccacttattcacatta |
125 |
Q |
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| T |
37914734 |
gggtttaaatctcgaacactccacttattcacatta |
37914699 |
T |
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