View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14854_high_34 (Length: 214)
Name: NF14854_high_34
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 3684368 - 3684554
Alignment:
| Q |
18 |
gaatctgaggtggacaacttgctgagaatgaggnnnnnnnnccatggcacgtgacagcaacgacctttttagggtacatgtagccatagtcaaagtagcc |
117 |
Q |
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| T |
3684368 |
gaatctgaggtggacaacttgctgagaatgaagttttttttccatggcacgtgatagcaacgacctttttagggtacatgtacccatagtcatagtagcc |
3684467 |
T |
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| Q |
118 |
acgattgttgggttcattattctcccgtggtgaagtccatggagttgagaccggtctgcttctgccatgaatgctgctctgtgctgc |
204 |
Q |
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| T |
3684468 |
acgattgttgggttcattattctcccgtggtgaagtccatggagttgagaccggtctgcttctgccatgaatgctgctgtgtgctgc |
3684554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 3676202 - 3676292
Alignment:
| Q |
18 |
gaatctgaggtggacaacttgctgagaatgaggnnnnnnnn-ccatggcacgtgacagcaacgacctttttagggtacatgtagccatagt |
107 |
Q |
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| T |
3676202 |
gaatctgaggtggacaacttgctgagaatgaggttgttttttccatggcatgtgacaacaacgacctttttagggtacatgtagccatagt |
3676292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 9159180 - 9159140
Alignment:
| Q |
59 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
99 |
Q |
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| T |
9159180 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
9159140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 9171248 - 9171288
Alignment:
| Q |
59 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
99 |
Q |
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| T |
9171248 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
9171288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 7013266 - 7013306
Alignment:
| Q |
59 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
99 |
Q |
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| T |
7013266 |
ccatggcacgtaacaacaacgacctttttagggtacatgta |
7013306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 7026202 - 7026242
Alignment:
| Q |
59 |
ccatggcacgtgacagcaacgacctttttagggtacatgta |
99 |
Q |
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| T |
7026202 |
ccatggcacgtaacaacaacgacctttttagggtacatgta |
7026242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 7047252 - 7047293
Alignment:
| Q |
59 |
ccatggcacgtgacagcaacgacctttttagggtacatgtag |
100 |
Q |
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| T |
7047252 |
ccatggcacgtgacagcaatgaccttttcagggaacatgtag |
7047293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 7041918 - 7041950
Alignment:
| Q |
59 |
ccatggcacgtgacagcaacgacctttttaggg |
91 |
Q |
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| T |
7041918 |
ccatggcacgtgacagcaacgacctttataggg |
7041950 |
T |
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