View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14854_high_36 (Length: 205)
Name: NF14854_high_36
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_high_36 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 40382815 - 40383019
Alignment:
| Q |
1 |
ttcacattctccacgtgagttcttttctcagatttccctgaaacatgatagcagtttgtttagaatttagatcctctaaaggaagtaaagttgataattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40382815 |
ttcacattctccacgtgagttcttttctcagatttccctgaaacatgatagcagtttgtttagaatttagatcttctaaaggaagtaaagttgataattt |
40382914 |
T |
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| Q |
101 |
gaaagttaataatttccattgaagtaaagattaagaataattggtgaataagctgtaaaaatcacaagtcattactcaggtgtaaagatgttctcacaaa |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
40382915 |
gaaagttaataatttccgttgaagtaaagattaagaataattggtgaataagctgtaaaaatcacaagtcattactcatgtgtgaagatgttctcacaaa |
40383014 |
T |
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| Q |
201 |
tgtct |
205 |
Q |
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||||| |
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| T |
40383015 |
tgtct |
40383019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 22792720 - 22792920
Alignment:
| Q |
3 |
cacattctccacgtgagttcttttctcagatttccctgaaacatgatagcagtttgtttagaatttagatcctctaaaggaagtaaagttgataatttga |
102 |
Q |
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||||||||| || ||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22792720 |
cacattctctacatgagtccttttctcagattaccctgaaacatgatagcattttgtttagaatttagatcctctaaaggaagtaaagttgataatttca |
22792819 |
T |
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| Q |
103 |
aagttaataatttccattgaagtaaagattaagaataattggtgaataagctgtaaaaatcacaagtcattactcaggtgtaaagatgttctcacaaatg |
202 |
Q |
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| T |
22792820 |
aagttaataatttccattgaagtaaagattaagaataattggtgaataagctg--agaatcacaagtaattactcatgtctaaagatgttctcacaaatg |
22792917 |
T |
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| Q |
203 |
tct |
205 |
Q |
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||| |
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| T |
22792918 |
tct |
22792920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 22810174 - 22810275
Alignment:
| Q |
19 |
gttcttttctcagatttccctgaaacatgatagcagtttgtttagaatttagatcctctaaaggaagtaaagttgataatttgaaagttaataatttcca |
118 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
22810174 |
gttcttttctcagattcccctgaaacatgataacagtttgtt-agactttagatccactaaaggaagtaaagttgataatgtgaaagttcataatttcca |
22810272 |
T |
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| Q |
119 |
ttg |
121 |
Q |
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||| |
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| T |
22810273 |
ttg |
22810275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 22813300 - 22813366
Alignment:
| Q |
1 |
ttcacattctccacgtgagttcttttctcagatttccctgaaacatgatagcagtttgtttagaatt |
67 |
Q |
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||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
22813300 |
ttcacattctctacatgagttcttttctcggattttcctgaaacatgatagcagtttgtttagaatt |
22813366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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