View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14854_high_4 (Length: 642)
Name: NF14854_high_4
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 127 - 434
Target Start/End: Complemental strand, 41343407 - 41343105
Alignment:
| Q |
127 |
agctgggattacaccttttgtggtggcagggattgaatttagcaagagaattgtaagtcacnnnnnnnacttgattattgctatctcatctcataaatta |
226 |
Q |
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| T |
41343407 |
agctgggattacaccttttgtggtggcagggattgaatttagcaagagaattgtaagtcactttttttacttgattattgctatctcat-----aaatta |
41343313 |
T |
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| Q |
227 |
tgaatctcattcttgtgtgttttttgtcttcaattttgaatatttgttacagattgctcaaaaaagatgtgagatgtgtggaggatcaggacttgttttt |
326 |
Q |
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| T |
41343312 |
tgaatctcattcttgtatgttttttgtcttcaattttgaatatttgttacagattgctcaaaaaagatgtgagatgtgtggaggatcaggacttgttttt |
41343213 |
T |
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| Q |
327 |
agggataagaactattttcgttgtccagaatgtggtatgtttattgaattctcttaatcttgattataagcattaatatcatcattttgatcatgctata |
426 |
Q |
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| T |
41343212 |
agggataagaactattttcgttgtccagaatgtggtatgtttattgaattctcttaatcttgattataagcattaatatcatcattttgatcatgctata |
41343113 |
T |
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| Q |
427 |
gtgtaaaa |
434 |
Q |
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| T |
41343112 |
gtttaaaa |
41343105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 449 - 624
Target Start/End: Complemental strand, 41343118 - 41342942
Alignment:
| Q |
449 |
gctaaagtttaaaatgacacttagaaacttgctacttctcattgattttttggttctcaaatatttaaggtaagttacttgtgtgaaatcgattccctca |
548 |
Q |
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| T |
41343118 |
gctatagtttaaaatgacacttagaaacttgctacttctcattgattttttggttctcaaatatttaaggtaagttacttgtgtgaaatcgattccctca |
41343019 |
T |
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| Q |
549 |
t-aaatcatatgctatctatttcaggtggatttcttccttggcaatcctggaaaagattcttctccagttaatgtat |
624 |
Q |
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| T |
41343018 |
taaaatcatatgctatctatttcaggtggatttcttccttggcaatcctggaaaagattcttctccagttaatgtat |
41342942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 553 - 624
Target Start/End: Complemental strand, 41325634 - 41325563
Alignment:
| Q |
553 |
tcatatgctatctatttcaggtggatttcttccttggcaatcctggaaaagattcttctccagttaatgtat |
624 |
Q |
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| T |
41325634 |
tcatatgctatcgattttaggtggatttcttccttggcagtcaaggaaaagattcttctctggttaatgtat |
41325563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 553 - 587
Target Start/End: Complemental strand, 41338506 - 41338472
Alignment:
| Q |
553 |
tcatatgctatctatttcaggtggatttcttcctt |
587 |
Q |
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| T |
41338506 |
tcatatgctatctatctcaggtggatttcttcctt |
41338472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 18745033 - 18744997
Alignment:
| Q |
23 |
tagaaaatcgaaaatgtcgaaagcaaatggtataaaa |
59 |
Q |
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| T |
18745033 |
tagaaaatcgaaaatgtcaaaagcaaatggtataaaa |
18744997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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