View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14854_low_1 (Length: 721)
Name: NF14854_low_1
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 574; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 11 - 624
Target Start/End: Original strand, 52010685 - 52011293
Alignment:
| Q |
11 |
atcatcaagatacaactctttcaaaatcgatcctaatgaatcagccaaaatattaagactagcatatgtgagaagggaacattggcttagatttatggat |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52010685 |
atcatcaagatacaactctttcaaaatcgatcctaatgaatcagccaaaatattaagactagcatatgtgagaagggaacattggcttagatttatggat |
52010784 |
T |
|
| Q |
111 |
ctaattgttgttgcagaagaaaccattagctgcaaccccttatcagtaggacggcatgcaccagtgagggatagactaatcaatctagacaagcagcttg |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52010785 |
ctaattgttgttgcagaagaaaccattagctgcaaccccttatcagtaagacggcatgcaccagtgagggatagactaatcaatctagacaagcagcttg |
52010884 |
T |
|
| Q |
211 |
gtgactttgccaatgtagaaagtaatgtatattctgttataactcgtccacactggtcaagttgcagcacctattccacaaataaatgttatggccatag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52010885 |
gtgactttgccaatgtagaaagtaatgtatattctgttataactcgtccacactggtcaagttgcagcacctattccacaaataaatgttccggccatag |
52010984 |
T |
|
| Q |
311 |
taataaaaatatcatcataattctcaccaactaaaatatattcacacaaagtaaattgtttgtaaaagacatatgaatgacaggaatttggattgtgtct |
410 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52010985 |
taataaaaatatcatcataattctcaccaactaaaatatattcacacaaagtaaattgtttgtaaaagacatatgaatgacaggaatttggattgtgtct |
52011084 |
T |
|
| Q |
411 |
gtgcgtacagtcagccacatcagtggccatttgatcaagatcgaacaattcaaattttaaactatttaaaacttaacatacaagaaacaccaaatgctat |
510 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52011085 |
gtgcgtacagtcagccacatcggtggccatttgatcaagatcgaacaattcaaattttaaactatttaaaacttaacatacaagaaacaccaaatgctat |
52011184 |
T |
|
| Q |
511 |
atgaaacaagtgaagttagtgtacatacctctaaaatggaagtgtccaacattccaaaacatttagtgaattcttcctctgtcaaccaggagcaatcttt |
610 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52011185 |
atgaaac-----aagttagtgtacatacctctaatatggaagtgtccaacattccaaaacatttagtgaattcttcctctgtcaaccaggagcaatcttt |
52011279 |
T |
|
| Q |
611 |
aagccgaatatgag |
624 |
Q |
| |
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|||||||||||||| |
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| T |
52011280 |
aagccgaatatgag |
52011293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 51998121 - 51998409
Alignment:
| Q |
11 |
atcatcaagatacaactctttcaaaatcgatcctaatgaatcagccaaaatattaagactagcatatgtgagaagggaacattggcttagatttatggat |
110 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
51998121 |
atcatcaagatataactccttcaaaagtgatcctaatgaatcagccaaaatatcgagactagcaaaagtgagaagggaacattggcttagatttatggat |
51998220 |
T |
|
| Q |
111 |
ctaattgttgttgcagaagaaaccattagctgcaaccccttatcagtaggacggcatgcaccagtgagggatagactaatcaatctagacaagcagcttg |
210 |
Q |
| |
|
|||| |||||||||||||||||| | || ||||||||| ||||||| | |||| |||||||| ||||| ||||||||||||||||||||||||||| ||| |
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| T |
51998221 |
ctaagtgttgttgcagaagaaactagtaactgcaaccctttatcagaaagacgacatgcaccggtgagagatagactaatcaatctagacaagcagtttg |
51998320 |
T |
|
| Q |
211 |
gtgactttgccaatgtagaaagtaatgtatattctgttataactcgtccacactggtcaagttgcagcacctattccacaaataaatgt |
299 |
Q |
| |
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||||||||||||||||| || ||||||||||||| ||||||| ||||||||| || | ||||||||| ||||||||||||||||||||| |
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| T |
51998321 |
gtgactttgccaatgtacaaggtaatgtatattcagttataattcgtccacattgctgaagttgcagaacctattccacaaataaatgt |
51998409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 621 - 707
Target Start/End: Complemental strand, 52011479 - 52011393
Alignment:
| Q |
621 |
tgagggaaaggtttagggttccttcgttgcaagaaatgtctcttaaaattcttgctaaccatgctgatggaatggtttcgcttgatg |
707 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52011479 |
tgagggaaaggtttagggttccttcgttgcaagaaatgtctcttaaaattcttgctaaccatgctgatggaatggtttcgcttgatg |
52011393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 533 - 619
Target Start/End: Complemental strand, 51988296 - 51988210
Alignment:
| Q |
533 |
acatacctctaaaatggaagtgtccaacattccaaaacatttagtgaattcttcctctgtcaaccaggagcaatctttaagccgaat |
619 |
Q |
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|||||||||||| |||||||||||||| |||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
51988296 |
acatacctctaatatggaagtgtccaatgttccaaaatattttataaattcttcctctgtcaaccagaagcaatctttaagccgaat |
51988210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 533 - 619
Target Start/End: Original strand, 52001337 - 52001423
Alignment:
| Q |
533 |
acatacctctaaaatggaagtgtccaacattccaaaacatttagtgaattcttcctctgtcaaccaggagcaatctttaagccgaat |
619 |
Q |
| |
|
|||||||||||| |||||| |||||||| |||||||| |||| || |||||||||||||||| ||| |||||||||||||||||||| |
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| T |
52001337 |
acatacctctaatatggaattgtccaactttccaaaatattttgtaaattcttcctctgtcatccaagagcaatctttaagccgaat |
52001423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 52000909 - 52000959
Alignment:
| Q |
249 |
ataactcgtccacactggtcaagttgcagcacctattccacaaataaatgt |
299 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||| ||||||||||||| |
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|
| T |
52000909 |
ataactcgtccacattggtcaagttgtagcacctattacacaaataaatgt |
52000959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 638 - 707
Target Start/End: Complemental strand, 52001597 - 52001528
Alignment:
| Q |
638 |
gttccttcgttgcaagaaatgtctcttaaaattcttgctaaccatgctgatggaatggtttcgcttgatg |
707 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| || |||| ||||||| | | ||||||||||| |
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| T |
52001597 |
gttccttcactgctagaaatgtctcttaaaattcttgccaatcatgttgatggacttgcttcgcttgatg |
52001528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 632 - 706
Target Start/End: Original strand, 51988030 - 51988104
Alignment:
| Q |
632 |
tttagggttccttcgttgcaagaaatgtctcttaaaattcttgctaaccatgctgatggaatggtttcgcttgat |
706 |
Q |
| |
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||||| |||||||| ||||||||| ||| ||||| |||||||| ||||||||||||| || | |||||||||| |
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|
| T |
51988030 |
tttagtgttccttcattgcaagaattgtgccttaacattcttgcgaaccatgctgatgccattgcttcgcttgat |
51988104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 533 - 624
Target Start/End: Original strand, 11749011 - 11749102
Alignment:
| Q |
533 |
acatacctctaaaatggaagtgtccaacattccaaaacatttagtgaattcttcctctgtcaaccaggagcaatctttaagccgaatatgag |
624 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| || |||||||||||||| ||||||||||||||| |||||||||| || ||||| |
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|
| T |
11749011 |
acatacctctaccgtggaagtgtccaacactccaaaatatgcagtgaattcttcctatgtcaaccaggagcagtctttaagccaaacatgag |
11749102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 133
Target Start/End: Complemental strand, 18271696 - 18271577
Alignment:
| Q |
14 |
atcaagatacaactctttcaaaatcgatcctaatgaatcagccaaaatattaagactagcatatgtgagaagggaacattggcttagatttatggatcta |
113 |
Q |
| |
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|||||| |||||||||||||||| | | ||||| ||||||||||||| |||||| ||| |||||||||| || || ||||| || ||||| |||||| |
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| T |
18271696 |
atcaaggtacaactctttcaaaagagttttcaatgattcagccaaaatatgaagactggcagatgtgagaagcgagcactggctaaggtttattgatcta |
18271597 |
T |
|
| Q |
114 |
attgttgttgcagaagaaac |
133 |
Q |
| |
|
| ||||| | ||||||||| |
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|
| T |
18271596 |
agtgttggagtagaagaaac |
18271577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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