View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14854_low_10 (Length: 514)
Name: NF14854_low_10
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 350
Target Start/End: Complemental strand, 2171346 - 2171012
Alignment:
| Q |
18 |
agtttaatcatgtttaatatataaccaaatcaccattagtattatgaagagnnnnnnngttaaactgttaaagtattatgaagagtttaacaaagtaagc |
117 |
Q |
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| T |
2171346 |
agtttaatcatgtttaatatataaccaaatcaccattagtattatgaagagtttttttgttaaactgttaaagtattatgaagagtttaacaaagtaagc |
2171247 |
T |
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| Q |
118 |
gtaatgttttttatttgatagtagtaacaattaaatgtttgatttggttttttaggaggataatcgataagcaatgcatctatggttctcttgtgtttgg |
217 |
Q |
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| T |
2171246 |
gtaatgttttttatttgatagtagtaacaattaaatgtttgatttggttttttaggaggataatcgataagcaatgcatctatggttctcttgtgtttgg |
2171147 |
T |
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| Q |
218 |
gtccttttagaatgaaagaaataatgtttgnnnnnnngtcaacaaaaattatatgtttgtttgatcatcataagaaatattttgattc--nnnnnnnnag |
315 |
Q |
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| T |
2171146 |
gtccttttggaatgaaagaaataatgtttgtttttttgtcaacaaaaattatatgtttgtttgatcatcataagaaatattttgattcttttttttttag |
2171047 |
T |
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| Q |
316 |
ggaaaatactttgatattgtaaccaaataataaca |
350 |
Q |
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| T |
2171046 |
ggaaaatactttgatattgtaaccaaataataaca |
2171012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 429 - 506
Target Start/End: Complemental strand, 2170875 - 2170798
Alignment:
| Q |
429 |
tagagagtacgcaacatataatatatgaagattcacatatcacaatatccttattatatttgcatgaagagtagtata |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
2170875 |
tagagagtacgcaacatataatatatgaagattcacatatcacaatctccttattatatttgcatgaagagtggtata |
2170798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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