View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14854_low_11 (Length: 496)
Name: NF14854_low_11
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Original strand, 28667052 - 28667498
Alignment:
| Q |
19 |
cactagactctaatctctcttgacaaaatttgcactaaatgtacgacttgcagttatctaattttatctaaactcaagtacaattgttatctaattttat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28667052 |
cactagactctaatctctcttgacaaaatttgcactaaatgtacgaattgcagtta--------------aactcaagtacaattgttatctaattttat |
28667137 |
T |
|
| Q |
119 |
tatccttttattacaatttgatcatacaaaattctttgatttaattttaaggatgctagcataaaagacaaacaaatgttcgatcttagctatgagaggt |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28667138 |
tatccatttattacaatttgatcatacaaaattctatgatttaattttaaggatgctagc-taaaagacaaacaaatgttcgatcttagctatgagaggt |
28667236 |
T |
|
| Q |
219 |
gtatgcatttagtgtacgaccatgaactcatgcctcgaacaaaattactcatatagtctagcggaagagatcagtctcccatagcataacgaagaaacaa |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28667237 |
gtatgcatttagtgtacgaccatgaactcgtgcctcgaacaaaattactcatatggtctagcggaagagatcagtctcccatagcataacgaacgaacaa |
28667336 |
T |
|
| Q |
319 |
atgttcgatctaaactgtgagaggtgtatatatttaatgtttgatcatgccttaaacaaaattaccgcctagtagcatagaagnnnnnnnnttacaagta |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
28667337 |
atgttcgatctaaactgtgagaggtgtatatatttagtgtttgatcatgcctcaaacaaaattaccgcctagtaacatagaag-aaaaaaattacaagtg |
28667435 |
T |
|
| Q |
419 |
tacttgccttatttgttgccaaagtagcaccactaacacccattttacccaatgctttctctg |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28667436 |
tacttgccttatttgttgccaaagtagcaccactaacacccatattacccaatgctttctctg |
28667498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University