View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14854_low_13 (Length: 425)
Name: NF14854_low_13
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 8693561 - 8693153
Alignment:
| Q |
1 |
tatagttaagtaaatcataccttcaattacatcaatattatataaataacgatgtaaaaccacccgaagaaaaaacatgtatcatatacatgaacaaaca |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8693561 |
tatagttaagtaaatcatacattcaaatacatcaatattagataaataacgatgtaaaaccacccaaagaaaaaacatgtatcatatacatgaacaaaca |
8693462 |
T |
|
| Q |
101 |
aggggtgacaaaataaggtatgatttaaagtttttcatggcttcttcgaagttctagccatggctgcttgtcgataccttgtagcataactttgaaacaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8693461 |
aggggtgacaaaataaggtatgatttaaagtttttcatggcttcttcgaagttctagccgtggctgcttgtcgataccttgtagcataactttgaaacaa |
8693362 |
T |
|
| Q |
201 |
agcaagtgcattactagttacttctgcaacattcttcgccttcactttaatcgtcgcaaccctcttgctcattctatgaccagggaacgattccacacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8693361 |
agcaagtgcattactagttacttctgcaacattcttcgccttaaccttaatcgtcgcaacactattgctcattctatgaccagggaacgattgcacacaa |
8693262 |
T |
|
| Q |
301 |
ctactagcgtcggttaaggcagtgctaacccatgtctcaacattacttatgtgccacaacattttatcattgatgattgtgttaaatttattcaaccttt |
400 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8693261 |
ctactagcatcggttaaggcagtgctaacccatgtctcaacattacttatgtgccacaacactttatcattgatgattgtgttaaatttattcaaccttt |
8693162 |
T |
|
| Q |
401 |
ttagttctt |
409 |
Q |
| |
|
||||||||| |
|
|
| T |
8693161 |
ttagttctt |
8693153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 42 - 409
Target Start/End: Complemental strand, 8675292 - 8674922
Alignment:
| Q |
42 |
ataaataacgatgtaaaaccacccgaagaaaaaacatgtat--catatacatgaacaaacaaggggtgacaaaataaggtatgatttaaa-gtttttcat |
138 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||||| |
|
|
| T |
8675292 |
ataaagaactatgtaaaaccacccgaagaaaaaacatgtatatcatatacatggacaaacaaggggtgataaaataagttatgatttaaaagtttttcat |
8675193 |
T |
|
| Q |
139 |
ggcttcttcgaagttctagccatggctgcttgtcgataccttgtagcataactttgaaacaaagcaagtgcattactagttacttctgcaacattcttcg |
238 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8675192 |
ggcttcttgacagttctagccgtggctgcttgtcgataccttgtagcataactttgaaacaaagcaagtgcattactagttacttctgcaacattcttcg |
8675093 |
T |
|
| Q |
239 |
ccttcactttaatcgtcgcaaccctcttgctcattctatgaccagggaacgattccacacaactactagcgtcggttaaggcagtgctaacccatgtctc |
338 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8675092 |
ccttaaccttaatcgtcgcaaccctcttgctcattctatgaccagggaacgattgcacacaactactagcgtcggttaaggcagtgctaacccatgtctc |
8674993 |
T |
|
| Q |
339 |
aacattacttatgtgccacaacattttatcattgatgattgtgttaaatttattcaacctttttagttctt |
409 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
8674992 |
aacattacttatgtgccacaacactttatcattgatgatggtgttaaatttgttcaacctttttagttctt |
8674922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 43 - 409
Target Start/End: Original strand, 8687182 - 8687544
Alignment:
| Q |
43 |
taaataacgatgtaaaaccacccgaagaaaaaacatgtatcatatacatgaacaaacaaggggtgacaaaataaggtatgatttaaagtttttcatggct |
142 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| | ||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
8687182 |
taaataactatgtaaaaccacccaaagaaaaaacatgtgt-atatacatggacaaacaaggggtgataaaataaggtatgatttcaagtttttcatggct |
8687280 |
T |
|
| Q |
143 |
tcttcgaagttctagccatggctgcttgtcgataccttgtagcataactttgaaacaaagcaagtgcattactagttacttctgcaacattcttcgcctt |
242 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8687281 |
tcttgacggttctagcc---gctgcttgtcgatacctagtagcataactttgaaacaaagcaagtgcattactagttacttctgcaacattcttcgcctt |
8687377 |
T |
|
| Q |
243 |
cactttaatcgtcgcaaccctcttgctcattctatgaccagggaacgattccacacaactactagcgtcggttaaggcagtgctaacccatgtctcaaca |
342 |
Q |
| |
|
||| |||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8687378 |
caccttaatcgtcgcaactcttttgctcattctatgaccagggaacgattgcacacaactactagcgtcggttaaggcagtgctaacccatgtctcaaca |
8687477 |
T |
|
| Q |
343 |
ttacttatgtgccacaacattttatcattgatgattgtgttaaatttattcaacctttttagttctt |
409 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8687478 |
ttacttatgtgccacaacactttatcattgatgattgtgttaaatttattcaacctttttagttctt |
8687544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 42 - 409
Target Start/End: Original strand, 8695752 - 8696113
Alignment:
| Q |
42 |
ataaataacgatgtaaaaccacccgaagaaaaaac-atgtatcatatacatgaacaaacaaggggtgacaaaataaggtatgatttaaagtttttcatgg |
140 |
Q |
| |
|
|||||||||| || |||||||||| |||||||||| |||||||||||||||| |||||||| ||||||||||| |||||||| |||| ||||||||| |
|
|
| T |
8695752 |
ataaataacgttgcaaaaccacccaaagaaaaaaccatgtatcatatacatggacaaacaaagggtgacaaaaa---gtatgatt-aaagattttcatgg |
8695847 |
T |
|
| Q |
141 |
cttcttcgaagttctagccatggctgcttgtcgataccttgtagcataactttgaaacaaagcaagtgcattactagttacttctgcaacattcttcgcc |
240 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
8695848 |
cttcttggaagttctagct---gcttcttgtcgataccttgtagcataactttgaaacaaagcaagtgcgttactagtaacttctgcaacattcttcgcc |
8695944 |
T |
|
| Q |
241 |
ttcactttaatcgtcgcaaccctcttgctcattctatgaccagggaacgattccacacaactactagcgtcggttaaggcagtgctaacccatgtctcaa |
340 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8695945 |
ttcaccttaatcgtcgcaaccctcttgctcattctatgaccagggaacgattgcacacaactactagcgtcggttaaggcagtgctaacccatgtctcaa |
8696044 |
T |
|
| Q |
341 |
cattacttatgtgccacaacattttatcattgatgattgtgttaaatttattcaacctttttagttctt |
409 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8696045 |
cattacttatgtgccacaacactttatcattgatgattgtgttaaatttgttcaacctttttagttctt |
8696113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University