View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14854_low_14 (Length: 419)
Name: NF14854_low_14
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 25569199 - 25569604
Alignment:
| Q |
1 |
attggtgatgaaaatgaatccagctcttcagaagtggaacacatggacgaaaatattagcactgctaggtgttgtggattgatcaaatatagtttcagac |
100 |
Q |
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| T |
25569199 |
attggtgatgaaaatgaatctagctcttcagaagtggaacacatggacgaaaatattagcactgctaggtgttgtggattgatcaaatatagtttcagac |
25569298 |
T |
|
| Q |
101 |
agtggattgcaaatttcttgtgtagattagtggagtgctgggggtagtcaaattgttggacttgatcttgattctgaagctgtgatcttagtgctttaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25569299 |
agtggattgcaaatttcttgtgtagattagtggagtgctgggggtagtcaaattgttggacttgatcttgattctgaagctgtgatcttagtgctttaat |
25569398 |
T |
|
| Q |
201 |
gttgctattgaatttgttggtctttatgagtcatgttcgcctacaaaagatgtatttattgatcatatcaattgtaaaatatttcaa-nnnnnnnnatta |
299 |
Q |
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||||| |||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25569399 |
gttgccattgtatttgttggtctttatgactcatgttagcctacaaaagatgtatttattgatcatatcaattgtaaaatatttcaatttttttttatta |
25569498 |
T |
|
| Q |
300 |
tgtcaattgaatggaaagagtttgatggatgctctttgaagtacatatacaaaatgacataggtgagagtgtatttgatttggattaccaggataaatgt |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25569499 |
tgtcaattgaatggaaagagtttgatggatgctctttgaagtacatatacaaaatgacaaaggtgagagtgtatttgatttggattaccaggataaatgt |
25569598 |
T |
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| Q |
400 |
aaaata |
405 |
Q |
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| T |
25569599 |
aaaata |
25569604 |
T |
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