View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14854_low_15 (Length: 411)
Name: NF14854_low_15
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_low_15 |
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| [»] scaffold0346 (2 HSPs) |
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Alignment Details
Target: scaffold0346 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: scaffold0346
Description:
Target: scaffold0346; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 43 - 293
Target Start/End: Original strand, 13270 - 13520
Alignment:
| Q |
43 |
taatagccatatttcaaatgtctaagaaaaatggtctggaaagaccataacagtcgtctacaaagtaagctttgcggtgtcatgacttttatcacttgtt |
142 |
Q |
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|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13270 |
taatagccatatttgaaatgtctaaggaaaatggtgtggaaagaccataacagtcgtctacaaagtaagctttgcggtgtcatgacttttatcacttgtt |
13369 |
T |
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| Q |
143 |
atgtgagtggaatacatagttcttatgctatcatccacaagaattttccacacgctgccgaagaccacataaagttcttatgcaaattttggagttgcat |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13370 |
atgtgagtggaatacatagttcttatgctatcatccacaagaaatttccacacgctgccgaagaccacataaagttcttatgcaaattttggagttgcat |
13469 |
T |
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| Q |
243 |
gagatttacaaaaaacaaattggcttctaccacaaaatacagtgacaaaaa |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13470 |
gagatttacaaaaaacaaattggcttctaccacaaaatacagtgacaaaaa |
13520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0346; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 316 - 411
Target Start/End: Complemental strand, 13574 - 13479
Alignment:
| Q |
316 |
ataatcggatagctcattcttacttctttgaattttaagctatgctaatcttcctttttgtctctgtcttttgtgttagtaaccaatttgtttttt |
411 |
Q |
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| T |
13574 |
ataataggatggcccattcttactactttgaattttaagctatgctagtcttcctttttgtcactgtattttgtggtagaagccaatttgtttttt |
13479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 43 - 293
Target Start/End: Complemental strand, 4332793 - 4332544
Alignment:
| Q |
43 |
taatagccatatttcaaatgtctaagaaaaatggtctggaaagaccataacagtcgtctacaaagtaagctttgcggtgtcatgacttttatcacttgtt |
142 |
Q |
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| T |
4332793 |
taatagccatatttcaaatgtctaaggaaaatggt-tggaaagaccataacagtcgtctacaaagtaagctttgcggtgtcatgacttttatcacttgtt |
4332695 |
T |
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| Q |
143 |
atgtgagtggaatacatagttcttatgctatcatccacaagaattttccacacgctgccgaagaccacataaagttcttatgcaaattttggagttgcat |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4332694 |
atgtgagtggaatacatagttcttatgctatcatccacaagaactttccacacgctgccgaagaccacataaaattcttatgcaaattttggagttgcat |
4332595 |
T |
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| Q |
243 |
gagatttacaaaaaacaaattggcttctaccacaaaatacagtgacaaaaa |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4332594 |
gagatttacaaaaaacaaattggcttctaccacaaaatacagtgacaaaaa |
4332544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 43 - 293
Target Start/End: Complemental strand, 4337040 - 4336791
Alignment:
| Q |
43 |
taatagccatatttcaaatgtctaagaaaaatggtctggaaagaccataacagtcgtctacaaagtaagctttgcggtgtcatgacttttatcacttgtt |
142 |
Q |
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| T |
4337040 |
taatagccatatttcaaatgtctaaggaaaatggt-tggaaagaccataacagtcgtctacaaagtaagctttgcggtgtcatgacttttatcacttgtt |
4336942 |
T |
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| Q |
143 |
atgtgagtggaatacatagttcttatgctatcatccacaagaattttccacacgctgccgaagaccacataaagttcttatgcaaattttggagttgcat |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4336941 |
atgtgagtggaatacatagttcttatgctatcatccacaagaactttccacacgctgccgaagaccacataaaattcttatgcaaattttggagttgcat |
4336842 |
T |
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| Q |
243 |
gagatttacaaaaaacaaattggcttctaccacaaaatacagtgacaaaaa |
293 |
Q |
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| T |
4336841 |
gagatttacaaaaaacaaattggcttctaccacaaaatacagtgacaaaaa |
4336791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 287 - 411
Target Start/End: Original strand, 4332461 - 4332585
Alignment:
| Q |
287 |
acaaaaataaattattcatacggtctcacataatcggatagctcattcttacttctttgaattttaagctatgctaatcttcctttttgtctctgtcttt |
386 |
Q |
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|||||||||||||||||||| | ||| | ||||| |||| || |||||||||| |||||||||||||||||||||| |||||||||||||| |||| ||| |
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| T |
4332461 |
acaaaaataaattattcataagttcttaaataataggatggcccattcttactactttgaattttaagctatgctagtcttcctttttgtcactgtattt |
4332560 |
T |
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| Q |
387 |
tgtgttagtaaccaatttgtttttt |
411 |
Q |
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|||| ||| | |||||||||||||| |
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| T |
4332561 |
tgtggtagaagccaatttgtttttt |
4332585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 287 - 411
Target Start/End: Original strand, 4336708 - 4336832
Alignment:
| Q |
287 |
acaaaaataaattattcatacggtctcacataatcggatagctcattcttacttctttgaattttaagctatgctaatcttcctttttgtctctgtcttt |
386 |
Q |
| |
|
|||||||||||||||||||| | ||| | ||||| |||| || |||||||||| |||||||||||||||||||||| |||||||||||||| |||| ||| |
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| T |
4336708 |
acaaaaataaattattcataagttcttaaataataggatggcccattcttactactttgaattttaagctatgctagtcttcctttttgtcactgtattt |
4336807 |
T |
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| Q |
387 |
tgtgttagtaaccaatttgtttttt |
411 |
Q |
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|||| ||| | |||||||||||||| |
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| T |
4336808 |
tgtggtagaagccaatttgtttttt |
4336832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 4451659 - 4451559
Alignment:
| Q |
189 |
tccacacgctgccgaagaccacataaagttcttatgcaaattttggagttgcatgagatttacaaaaaacaaattggcttctaccacaaaatacagtgac |
288 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||| ||||||||||||||||| ||| || |
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| T |
4451659 |
tccacaccctgccgaagaccacataaagttcttatgcaaattttggagttatatgatattaacaaa----aaatttgcttctaccacaaaataaagtcac |
4451564 |
T |
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| Q |
289 |
aaaaa |
293 |
Q |
| |
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||||| |
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| T |
4451563 |
aaaaa |
4451559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 293
Target Start/End: Original strand, 4478393 - 4478509
Alignment:
| Q |
171 |
tatcatccacaagaattttccacacgctgccgaagaccacataaagttcttatgcaaattttggagttgcatgagatttacaaaaaacaaattggcttct |
270 |
Q |
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|
|||||||||||||||| | |||||| |||| ||||||||||||||||| || ||||| |||||||||| ||||||||| ||||||| ||| |||| |
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| T |
4478393 |
tatcatccacaagaatgtaccacaccctgcagaagaccacataaagttattgtgcaatttttggagtt--atgagattttcaaaaaa----ttgttttct |
4478486 |
T |
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| Q |
271 |
accacaaaatacagtgacaaaaa |
293 |
Q |
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||| ||||||| ||||||||||| |
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| T |
4478487 |
acctcaaaataaagtgacaaaaa |
4478509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 4404553 - 4404504
Alignment:
| Q |
112 |
ctttgcggtgtcatgacttttatcacttgttatgtgagtggaatacatag |
161 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4404553 |
ctttggggtgtcatgacttttatcacttgttatgtgagtggaatagatag |
4404504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 4409538 - 4409484
Alignment:
| Q |
171 |
tatcatccacaagaattttccacacgctgccgaagaccacataaagttcttatgc |
225 |
Q |
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| T |
4409538 |
tatcatccacaagaacattccacaccctgccgaagaccacataaagtttttatgc |
4409484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 162
Target Start/End: Complemental strand, 4451794 - 4451744
Alignment:
| Q |
112 |
ctttgcggtgtcatgacttttatcacttgttatgtgagtggaatacatagt |
162 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
4451794 |
ctttgcggtgtcatgacttttatcacttgatatgtaggtggaatacatagt |
4451744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 150
Target Start/End: Original strand, 4478303 - 4478331
Alignment:
| Q |
122 |
tcatgacttttatcacttgttatgtgagt |
150 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4478303 |
tcatgacttttatcacttgttatgtgagt |
4478331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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