View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14854_low_17 (Length: 399)
Name: NF14854_low_17
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_low_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 7 - 399
Target Start/End: Complemental strand, 33691673 - 33691281
Alignment:
| Q |
7 |
ataggcacatgctacattactttatctgaatatcaaaacaggtaaacgaaaaaatctaagtaattggttggttgaaaatagctagatatagtaaactata |
106 |
Q |
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| T |
33691673 |
ataggcacatgctacattactttatctgaatatcaaaacaggtaaacgaaaaaatctaagtaattggttggttgaaaatagctagatatagtaaactata |
33691574 |
T |
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| Q |
107 |
ttggtgagtgaaagaaagcctcagagattaaaaagtcaggacaaacccaaggtagcagtcgagatagttaattgtcttgaaaatgacattaatcatgatg |
206 |
Q |
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| T |
33691573 |
ttggtgagtgaaagaaagcctcagagattaaaaagtcaggacaaacccaaggtagcagtcgagatagttaattgtcttgaaaatgacattaatcatgatg |
33691474 |
T |
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| Q |
207 |
tgacgtatttgactcggagggtggtgcagttggaggcgtgaaggagaatttggtgcatcaaattataactcccaaattttcatcatattatttttaagcc |
306 |
Q |
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| T |
33691473 |
tgacgtatttgactaggagggtggtgcagttggaggcgtgaaggagaatttggtgcatcaaattataactcccaaattttcatcaaattatttttaagcc |
33691374 |
T |
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| Q |
307 |
ttaagacattaattctttgcacggttgagaaaccttcaatggcgtttgttgaacatttgtctttgtgcattttgttctgtagcatatattctt |
399 |
Q |
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| T |
33691373 |
ttaagacattaattctttgcacggttgagaaaccttcaatggcgtttgttgaacatttgtctttgtgcattttgttctgtagcatattttctt |
33691281 |
T |
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