View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14854_low_21 (Length: 335)

Name: NF14854_low_21
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14854_low_21
NF14854_low_21
[»] chr3 (5 HSPs)
chr3 (74-330)||(2095436-2095692)
chr3 (1-39)||(2095328-2095366)
chr3 (147-211)||(11503139-11503205)
chr3 (149-211)||(11690035-11690097)
chr3 (114-192)||(26757869-26757948)
[»] chr1 (7 HSPs)
chr1 (109-330)||(16584572-16584787)
chr1 (146-301)||(42009710-42009868)
chr1 (150-330)||(8084283-8084463)
chr1 (141-302)||(11620205-11620365)
chr1 (152-228)||(1161254-1161330)
chr1 (251-330)||(12070060-12070139)
chr1 (145-193)||(25787380-25787428)
[»] chr2 (4 HSPs)
chr2 (145-330)||(4638462-4638647)
chr2 (109-222)||(31111676-31111783)
chr2 (170-211)||(30340695-30340736)
chr2 (148-188)||(13852130-13852170)
[»] chr5 (2 HSPs)
chr5 (168-330)||(31896193-31896355)
chr5 (146-295)||(16746179-16746325)
[»] chr4 (4 HSPs)
chr4 (109-330)||(23107610-23107824)
chr4 (144-200)||(28319128-28319184)
chr4 (42-108)||(9243051-9243117)
chr4 (145-202)||(38388202-38388261)
[»] scaffold0565 (1 HSPs)
scaffold0565 (109-330)||(1556-1764)
[»] chr7 (6 HSPs)
chr7 (149-330)||(7995256-7995440)
chr7 (281-330)||(7995442-7995491)
chr7 (141-201)||(46993555-46993613)
chr7 (55-102)||(31877366-31877413)
chr7 (145-210)||(2197490-2197558)
chr7 (170-199)||(48638162-48638191)
[»] chr8 (4 HSPs)
chr8 (156-327)||(17722115-17722287)
chr8 (168-291)||(44223074-44223196)
chr8 (144-228)||(7956150-7956234)
chr8 (151-235)||(35949099-35949183)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 74 - 330
Target Start/End: Original strand, 2095436 - 2095692
Alignment:
Q  74 acgcgagtgttttgtgcaggagga-gagcataattcactttttaattcattcactttctctaatcattatcttcatctcatctcattagtcagattcttt 172  Q
    |||||||||||||||| ||| ||  |||||||||| | |||||||| |||||||||||||||||||||||||||||| ||||||||||| |||| |||||    
T  2095436 acgcgagtgttttgtgtagggggttgagcataatttattttttaatccattcactttctctaatcattatcttcatc-catctcattagccagactcttt 2095534  T
Q  173 catttctactaaaaaagaaaccctagccgtcaatcacacaaaactcattgttcatcgccaccgaccaccgttaagattgttcatctcttggttgatttta 272  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |  |   |||||||||||||||||||||||||||||    
T  2095535 catttctactaaaaaagaaaccctagccgccaaccacacaaaactcattgttcatcgccaccggcggctcctaagattgttcatctcttggttgatttta 2095634  T
Q  273 tcatgtttatgccattgatttatactcattatatttcattgttttccatgttcatttt 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2095635 tcatgtttatgccattgatttatactcattatatttcattgttttccatgttcatttt 2095692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 2095328 - 2095366
Alignment:
Q  1 tgctttgaaaatttttcatgcttttgaaattgttaacta 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2095328 tgctttgaaaatttttcatgcttttgaaattgttaacta 2095366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 11503205 - 11503139
Alignment:
Q  147 atctcatctcattagtcagattct--ttcatttctactaaaaaagaaaccctagccgtcaatcacac 211  Q
    |||||||||||| | ||||| |||  ||||||||||||||||||||||||||||| ||||| |||||    
T  11503205 atctcatctcatcactcagactctatttcatttctactaaaaaagaaaccctagctgtcaaccacac 11503139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 11690097 - 11690035
Alignment:
Q  149 ctcatctcattagtcagattctttcatttctactaaaaaagaaaccctagccgtcaatcacac 211  Q
    |||||||||| | ||| | ||||||||||||||||||| ||||||| ||| |||||| |||||    
T  11690097 ctcatctcatcactcaaactctttcatttctactaaaagagaaaccgtagacgtcaaccacac 11690035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 192
Target Start/End: Original strand, 26757869 - 26757948
Alignment:
Q  114 ttaattcattcactttctctaatcattatcttcatctcatctcattagtcagattc--tttcatttctactaaaaaagaaa 192  Q
    |||||||||||||||||||| ||||| ||| |||||||||||||| |  || | ||  |||| ||||||||||||||||||    
T  26757869 ttaattcattcactttctctcatcatcatc-tcatctcatctcatcacccacactctatttcgtttctactaaaaaagaaa 26757948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 109 - 330
Target Start/End: Complemental strand, 16584787 - 16584572
Alignment:
Q  109 actttttaattcattcactttctctaatcattatcttcatctcatctcattagtcagattctttcatttctactaaaaaagaaaccctagccgtcaatca 208  Q
    |||||||||| ||||||||||||||||||      ||||||||||||||| ||||||| | ||||||||||||| |||||||||||||||||||||| ||    
T  16584787 actttttaatccattcactttctctaatc------ttcatctcatctcatcagtcagactatttcatttctacttaaaaagaaaccctagccgtcaacca 16584694  T
Q  209 cacaaaactcattgttcatcgccaccgaccaccgttaagattgttcatctcttggttgattttatcatgtttatgccattgatttatactcattatattt 308  Q
    ||| || | ||||||||||||||||||  ||||| | ||||||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||    
T  16584693 caccaagcccattgttcatcgccaccggtcaccgctgagattgttcatctcttggttagttttatcatgtttatgccattgatttgtagtcattatattt 16584594  T
Q  309 cattgttttccatgttcatttt 330  Q
    ||||||||||||||||||||||    
T  16584593 cattgttttccatgttcatttt 16584572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 146 - 301
Target Start/End: Complemental strand, 42009868 - 42009710
Alignment:
Q  146 catctcatctcattagtcagattctttcatttctactaaaaaagaaaccctagccgtcaatcacacaaaactcattgttcatcgccaccgac---caccg 242  Q
    ||||||||||| | ||||||| |||| |||||||||||||||||||||||||||||| || ||||| ||||||||||||||| ||||||| |   |||||    
T  42009868 catctcatctcttcagtcagactcttacatttctactaaaaaagaaaccctagccgttaaccacaccaaactcattgttcattgccaccgccggtcaccg 42009769  T
Q  243 ttaagattgttcatctcttggttgattttatcatgtttatgccattgatttatactcat 301  Q
     ||| || |||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  42009768 ctaatatcgttcatctcttggttagttttatcatgtttatgccattgatttatactcat 42009710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 150 - 330
Target Start/End: Original strand, 8084283 - 8084463
Alignment:
Q  150 tcatctcattagtcagattctttcatttctactaaaaaagaaaccctagccgtcaatcacac-aaaactc--attgttcatcgccaccgaccaccgttaa 246  Q
    ||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| ||||| ||||| |  ||||||| |||||||||  ||||| | |    
T  8084283 tcatctcattagtcagactcttccatttctattaaaaaagaaaccctagccgtcaaccacaccaaaacaccaattgttcttcgccaccggtcaccgctga 8084382  T
Q  247 gattgttcatctcttggttgattttatcatgtttatgccattgatttatactcattatatttcattgttttccatgttcatttt 330  Q
    ||| ||||||||    |||  |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8084383 gatcgttcatcta---gttagttttatcaggtttatgccattgatttatactcattatattttattgttttccatgttcatttt 8084463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 141 - 302
Target Start/End: Original strand, 11620205 - 11620365
Alignment:
Q  141 atcttcatctcatctcattagtcagattctttcatttctactaaaaaagaaaccctagccgtcaatcacacaaaactcattgttcatcgccaccgaccac 240  Q
    |||||||||||||||||| ||| | | ||||||||| ||||||||||||||||||||||||| || ||||| |||| ||||||||||||||||||  |||    
T  11620205 atcttcatctcatctcatcagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccaccggtcac 11620304  T
Q  241 cgttaagattgttcatctcttggttgattttatcatgtttatgccattgatttatactcatt 302  Q
    || | |||| |||||| ||||||||  ||||| ||||||||||||||||||||||| |||||    
T  11620305 cgctgagatcgttcatttcttggttagtttta-catgtttatgccattgatttatagtcatt 11620365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 1161330 - 1161254
Alignment:
Q  152 atctcattagtcagattctttcatttctactaaaaaagaaaccctagccgtcaatcacacaaaactcattgttcatc 228  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||| |||||||||||    
T  1161330 atctcatcagtcagactctttcatttctactaaaaaagaaaccctagtcgtcaaccacaccaaacccattgttcatc 1161254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 251 - 330
Target Start/End: Complemental strand, 12070139 - 12070060
Alignment:
Q  251 gttcatctcttggttgattttatcatgtttatgccattgatttatactcattatatttcattgttttccatgttcatttt 330  Q
    ||||||||||| |||  |||||| |||||||||  ||||||||||||||||||||||| |||||||| ||||||||||||    
T  12070139 gttcatctcttagttagttttattatgtttatgttattgatttatactcattatattttattgtttttcatgttcatttt 12070060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 25787380 - 25787428
Alignment:
Q  145 tcatctcatctcattagtcagattctttcatttctactaaaaaagaaac 193  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  25787380 tcatctcatctcatcagtcagactctttcatttctactaaaaaagaaac 25787428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 145 - 330
Target Start/End: Original strand, 4638462 - 4638647
Alignment:
Q  145 tcatctcatctcattagtcagattctttcatttctactaaaaaagaaaccctagccgtcaatcacacaaaactcattgttcatcgccaccgaccaccgtt 244  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||| |||||||||||||||||| |||||| |    
T  4638462 tcatctcatctcataagtcagactctttcatttctactaaaaaagaaaccctatccgtcaaccacaccaaacccattgttcatcgccaccggccaccgct 4638561  T
Q  245 aagattgttcatctcttggttgattttatcatgtttatgccattgatttatactcattatatttcattgttttccatgttcatttt 330  Q
     |||| |||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4638562 gagatcgttcatctcttggttagttttatcatatttatgccattgatttatactcattatatttcattgttttccatgttgatttt 4638647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 31111676 - 31111783
Alignment:
Q  109 actttttaattcattcactttctctaatcattatcttcatctcatctcattagtcagattctttcatttctactaaaaaagaaaccctagccgtcaatca 208  Q
    ||||||||||||||||||||||||| |||      |||||||||| | |||||||||| ||||||||||||||||| ||||||||||||| |||||| ||    
T  31111676 actttttaattcattcactttctctcatc------ttcatctcatttaattagtcagactctttcatttctactaagaaagaaaccctagtcgtcaacca 31111769  T
Q  209 cacaaaactcattg 222  Q
     || |||| |||||    
T  31111770 taccaaacccattg 31111783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 30340695 - 30340736
Alignment:
Q  170 tttcatttctactaaaaaagaaaccctagccgtcaatcacac 211  Q
    |||||||||| |||||||||||||||||||| |||| |||||    
T  30340695 tttcatttcttctaaaaaagaaaccctagccatcaaccacac 30340736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 13852170 - 13852130
Alignment:
Q  148 tctcatctcattagtcagattctttcatttctactaaaaaa 188  Q
    ||||||||||| ||| ||| |||||||||||||||||||||    
T  13852170 tctcatctcatcagttagactctttcatttctactaaaaaa 13852130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 168 - 330
Target Start/End: Original strand, 31896193 - 31896355
Alignment:
Q  168 tctttcatttctactaaaaaagaaaccctagccgtcaatcacacaaaactcattgttcatcgccaccgaccaccgttaagattgttcatctcttggttga 267  Q
    ||||||||||||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||||  ||||| | |||| ||||||||||||||| |    
T  31896193 tctttcatttctactaaaaaagaaaccatagccgtcaaccacaccaaacccattgttcatcgccaccggtcaccgctgagatcgttcatctcttggttaa 31896292  T
Q  268 ttttatcatgtttatgccattgatttatactcattatatttcattgttttccatgttcatttt 330  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  31896293 ttttatcatgtttatgccattgatttatactcattttatctcattgttttccatgttcatttt 31896355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 295
Target Start/End: Complemental strand, 16746325 - 16746179
Alignment:
Q  146 catctcatctcattagtcagattctttcatttctactaaaaaagaaaccctagccgtcaatcacacaaaactcattgttcatcgccaccgaccaccgtta 245  Q
    ||||||||||||| | | ||| |||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||||||||| ||||||  | ||| |     
T  16746325 catctcatctcatcatttagactctttcatttctactaaaaaagaaactctagccgtcaaccacaccaaacccattgttcatcaccaccggtccccgctg 16746226  T
Q  246 agattgttcatctcttggttgattttatcatgtttatgccattgatttat 295  Q
    |||| |||||||   |||||  ||||||||||||||||||||||||||||    
T  16746225 agatcgttcatc---tggttagttttatcatgtttatgccattgatttat 16746179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 8e-52; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 109 - 330
Target Start/End: Complemental strand, 23107824 - 23107610
Alignment:
Q  109 actttttaattcattcactttctctaatcattatcttcatctcatctcattagtcagattctttcatttctactaaaaaagaaaccctagccgtcaatca 208  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||||  ||||       |||||||||| || ||||||| |||||||||||| |     
T  23107824 actttttaatccattcactttctctaatcatcatcttcatctcatctcatcggtca-------tcatttctaccaagaaagaaatcctagccgtcaaccg 23107732  T
Q  209 cacaaaactcattgttcatcgccaccgaccaccgttaagattgttcatctcttggttgattttatcatgtttatgccattgatttatactcattatattt 308  Q
    ||  |||| || ||||||||| |||||  |||| || |||| ||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||    
T  23107731 catcaaacccaatgttcatcgtcaccggtcaccattgagatcgttcatctcttagttaattttatcatgtttatgccattaatttatactcattatattt 23107632  T
Q  309 cattgttttccatgttcatttt 330  Q
    |||| |||||||||||||||||    
T  23107631 cattcttttccatgttcatttt 23107610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 28319184 - 28319128
Alignment:
Q  144 ttcatctcatctcattagtcagattctttcatttctactaaaaaagaaaccctagcc 200  Q
    ||||||||||||||| ||||||| |||||| |||||||||||| |||||||||||||    
T  28319184 ttcatctcatctcatcagtcagactctttcttttctactaaaagagaaaccctagcc 28319128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 9243051 - 9243117
Alignment:
Q  42 tcacgcaaaggcgtttttggcatggttgtaggacgcgagtgttttgtgcaggaggagagcataattc 108  Q
    |||||||  ||| |||| |||||||||| ||| ||||||||||||||||||| | |||||| |||||    
T  9243051 tcacgcacgggcattttaggcatggttgcagggcgcgagtgttttgtgcaggggaagagcaaaattc 9243117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 38388202 - 38388261
Alignment:
Q  145 tcatctcatctcattagtcagattct--ttcatttctactaaaaaagaaaccctagccgt 202  Q
    |||||||||||||| | ||||| |||  |||||||||||||||| || ||||||||||||    
T  38388202 tcatctcatctcatcactcagactctatttcatttctactaaaataggaaccctagccgt 38388261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 109 - 330
Target Start/End: Complemental strand, 1764 - 1556
Alignment:
Q  109 actttttaattcattcactttctctaatcattatcttcatctcatctcattagtcagattctttcatttctactaaaaaagaaaccctagccgtcaatca 208  Q
    |||||||||| |||||||||||||| ||||| ||||||||||| ||| |        | |||||||||||||||||||||||||| |||   ||||| ||    
T  1764 actttttaatccattcactttctctcatcatcatcttcatctcttctta--------actctttcatttctactaaaaaagaaactctaagtgtcaacca 1673  T
Q  209 cacaaaactcattgttcatcgccaccgaccaccgttaagattgttcatctcttggttgattttatcatgtttatgccattgatttatactcattatattt 308  Q
    ||| ||     ||||||||||||||||  ||||| | |||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  1672 caccaa-----ttgttcatcgccaccggtcaccgctgagatcgttcatctcttggttagttttatcatgtttatgccattgatttatactcattatattt 1578  T
Q  309 cattgttttccatgttcatttt 330  Q
    ||||||||||||||||||||||    
T  1577 cattgttttccatgttcatttt 1556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 149 - 330
Target Start/End: Original strand, 7995256 - 7995440
Alignment:
Q  149 ctcatctcattagtcagattctttcatttctactaaaaaagaaaccctagccgtcaatcacacaaaactcattgttcatcgccaccgac---caccgtta 245  Q
    ||||||| || |||||||  ||||||||||||||| ||||||||||||| | || || || |  |||| |||||||||||||||||  |   ||||| ||    
T  7995256 ctcatcttatcagtcagaccctttcatttctactacaaaagaaaccctaactgttaaccaaatcaaacccattgttcatcgccaccaccggtcaccgcta 7995355  T
Q  246 agattgttcatctcttggttgattttatcatgtttatgccattgatttatactcattatatttcattgttttccatgttcatttt 330  Q
    |||| ||||||||||| |||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7995356 agatcgttcatctcttagttagttttatcatgtttatgtcattgatttatactcattatatttcattgttttccatgttcatttt 7995440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 7995442 - 7995491
Alignment:
Q  281 atgccattgatttatactcattatatttcattgttttccatgttcatttt 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7995442 atgccattgatttatactcattatatttcattgttttccatgttcatttt 7995491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 46993555 - 46993613
Alignment:
Q  141 atcttcatctcatctcattagtcagattctttcatttctactaaaaaagaaaccctagccg 201  Q
    |||||||||||||||||| |||  || ||||| |||||||||| |||||||||||||||||    
T  46993555 atcttcatctcatctcataagt--gactctttaatttctactacaaaagaaaccctagccg 46993613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 55 - 102
Target Start/End: Complemental strand, 31877413 - 31877366
Alignment:
Q  55 tttttggcatggttgtaggacgcgagtgttttgtgcaggaggagagca 102  Q
    |||||||||| | ||||||||||||||||||||||| || ||||||||    
T  31877413 tttttggcatagctgtaggacgcgagtgttttgtgctgggggagagca 31877366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 2197558 - 2197490
Alignment:
Q  145 tcatctcatctcattagtcagattct--ttcatttctactaaaaaa-gaaaccctagccgtcaatcaca 210  Q
    |||||||||||||| | ||||| |||  |||||||||||||||||| |||||||||| |||||| ||||    
T  2197558 tcatctcatctcatcactcagactctatttcatttctactaaaaaaagaaaccctagtcgtcaaccaca 2197490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 199
Target Start/End: Complemental strand, 48638191 - 48638162
Alignment:
Q  170 tttcatttctactaaaaaagaaaccctagc 199  Q
    ||||||||||||||||||||||||||||||    
T  48638191 tttcatttctactaaaaaagaaaccctagc 48638162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 156 - 327
Target Start/End: Complemental strand, 17722287 - 17722115
Alignment:
Q  156 cattagtcagattctttcatttctactaaaaaagaaaccctagccgtcaatc----acacaaaactcattgttcatcgccaccgaccaccgttaagattg 251  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||| |    |||| |||| ||||||||||| ||||||  ||||| | |||| |    
T  17722287 cattagtcagactctttcatttctactaaaaaataaaccctagccgtcaacctgccacaccaaacccattgttcatcaccaccggtcaccgctgagatcg 17722188  T
Q  252 ttcatctcttggttgattttatcatgtttatgccattgatttatactcattatatttcattgttttccatgttcat 327  Q
    |||||||   | ||  ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  17722187 ttcatct---gattagttttatcatgtttatgctattgatttatactcattatatttcattgtttttcatgttcat 17722115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 168 - 291
Target Start/End: Complemental strand, 44223196 - 44223074
Alignment:
Q  168 tctttcatttctactaaaaaagaaaccctagccgtcaatcacacaaaactcattgttcatcgccaccgaccaccgttaagattgttcatctcttggttga 267  Q
    |||||||||||||||||||||||||| | ||||||||| ||||| |||||||| ||||||||||||||  ||||| | |||| |||||||||||||||      
T  44223196 tctttcatttctactaaaaaagaaactcaagccgtcaaccacaccaaactcat-gttcatcgccaccggtcaccgctgagatcgttcatctcttggttag 44223098  T
Q  268 ttttatcatgtttatgccattgat 291  Q
    ||||||||||||||||||||||||    
T  44223097 ttttatcatgtttatgccattgat 44223074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 7956234 - 7956150
Alignment:
Q  144 ttcatctcatctcattagtcagattctttcatttctactaaaaaagaaaccctagccgtcaatcacacaaaactcattgttcatc 228  Q
    ||||||||||||||| ||||| | ||||| |||||||||||||||||||| ||||  ||||| ||||| ||||||||||||||||    
T  7956234 ttcatctcatctcatcagtcaaactctttgatttctactaaaaaagaaactctagttgtcaaccacaccaaactcattgttcatc 7956150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 35949099 - 35949183
Alignment:
Q  151 catctcattagtcagattctttcatttctactaaaaaagaaaccctagccgtcaatcacacaaaactcattgttcatcgccaccg 235  Q
    ||||| || ||||||| |||||||||||||||| |||||||||| || ||||||| ||||| ||||  |||||||||||||||||    
T  35949099 catcttatcagtcagactctttcatttctactagaaaagaaaccataaccgtcaaccacaccaaaccaattgttcatcgccaccg 35949183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University