View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14854_low_23 (Length: 335)
Name: NF14854_low_23
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 4331984 - 4332308
Alignment:
| Q |
1 |
tttcgaagtgatctatatttatgtaaaaaatttggttcgtgatggttcagaagccttaaataatggttcgtaatggttcaagttcagttctgtttttctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4331984 |
tttcgaagtgatctatatttatgtaaaaaatttggttcgtgatggttcagaagccttaaataatggttcgtaatggttcaagttcagttctgtttttctt |
4332083 |
T |
|
| Q |
101 |
tttattaaaccgttcggttaataactgatactgaaatctcgttggtttcaatatcggttcagcagctcagttcaacattttggnnnnnnngtacattcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
4332084 |
tttattaaaccgttcggttaataactgatactgaaatctcgttggtttcaatatcggttcagcagctcagttcaacattttggtttttttgtccattcct |
4332183 |
T |
|
| Q |
201 |
agtaataatactaaataggcttttgaagtcgagttagttggtttgggtctatgaagtgtgttcttttcctaaatctcatattcaattctcccctgtataa |
300 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4332184 |
atgtataatactaaataggcttttgaagtcgagttagttggtttgggtctatgaagtgtgttcttttcctaagtctcatattcaattctcccctgtataa |
4332283 |
T |
|
| Q |
301 |
tttcggtatgctaatttaacttctt |
325 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
4332284 |
tttcggtatgctaatttaacttctt |
4332308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 4346924 - 4347248
Alignment:
| Q |
1 |
tttcgaagtgatctatatttatgtaaaaaatttggttcgtgatggttcagaagccttaaataatggttcgtaatggttcaagttcagttctgtttttctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4346924 |
tttcgaagtgatctatatttatgtaaaaaatttggttcgtgatggtttagaagcctaaaataatggttcgtaatggttcaagttcagttctgtttttctt |
4347023 |
T |
|
| Q |
101 |
tttattaaaccgttcggttaataactgatactgaaatctcgttggtttcaatatcggttcagcagctcagttcaacattttggnnnnnnngtacattcct |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||| || ||||||| |
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| T |
4347024 |
tttattaaaccgttcgtttaataactgatactgaaatctggttggtttcaatatcggttgagcagttcagttcaacattttggtttttttgtccattcct |
4347123 |
T |
|
| Q |
201 |
agtaataatactaaataggcttttgaagtcgagttagttggtttgggtctatgaagtgtgttcttttcctaaatctcatattcaattctcccctgtataa |
300 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| ||||||| |
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| T |
4347124 |
atgtataatactaaataggcttttgaagtcgagttagttggtttgggtctatgaagtgtgttcttttccaaagtctcgtattcaattctcccatgtataa |
4347223 |
T |
|
| Q |
301 |
tttcggtatgctaatttaacttctt |
325 |
Q |
| |
|
||| ||||||||||||||||||||| |
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| T |
4347224 |
ttttggtatgctaatttaacttctt |
4347248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 4336235 - 4336561
Alignment:
| Q |
1 |
tttcgaagtgatctatatttatgtaaaaaatttggttcgtgatggttcagaagccttaaataatggttcgtaatggttcaagttcagttctgtttttctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4336235 |
tttcgaagtgatctatatttatgtaaaaaatttggttcgtgatggttctgaagccttaaataatggttcgtaatggttcaagttcagttctgtttttctt |
4336334 |
T |
|
| Q |
101 |
tttattaaaccgttcggttaataactgatactgaaatctcgttggtttcaatatcggttcagcagctcagttcaacattttggnnnnnnngtacattcct |
200 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||||| |
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| T |
4336335 |
tttattaaaccgttcggttaataacggatactgaaatctcgttggtttcaatatcggtttagcagttcagttcaacattttggtttttttgtccattcct |
4336434 |
T |
|
| Q |
201 |
agtaataatactaaataggcttttgaagtcgagttagttggtttggg--tctatgaagtgtgttcttttcctaaatctcatattcaattctcccctgtat |
298 |
Q |
| |
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| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||| |||| |
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| T |
4336435 |
atgtataatactaaataggcttttgaagttgagttagttggtttgggtctctatgaagtgtgttcttttccaaagtctcatattcaattctcccccgtat |
4336534 |
T |
|
| Q |
299 |
aatttcggtatgctaatttaacttctt |
325 |
Q |
| |
|
|||||| ||||||||||||| |||||| |
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| T |
4336535 |
aatttccgtatgctaatttaccttctt |
4336561 |
T |
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