View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14854_low_25 (Length: 291)
Name: NF14854_low_25
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 17957572 - 17957292
Alignment:
| Q |
1 |
cgtcttttttgaacatgacctatatcctggnnnnnnn-tgagtttgggcattcagaaacattcagatattcaacggtcacaatcacatgcacaagtatca |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
17957572 |
cgtcttttttgaacatgacctatatcctggaaaaaaaatgagtttgggcattcaaaaacattcagatattcaaccgtcacaatcacatacacaagtatca |
17957473 |
T |
|
| Q |
100 |
gtcaaaaaagcaagtcaatcatttggtactcgcaaatggcttcgaaaaacaactgaaaaagtgaatgaaccttttggagttctcacatgggttgacaaag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17957472 |
gtcaaaaaagcaagtcaatcatttggtactcgcaaatggcttcgaaaaacaactgaaaaagtgaatcaaccttttggagttctcacatgggttgacaaag |
17957373 |
T |
|
| Q |
200 |
caaccaaaacacaaactaaaaatagaaatcaaccttttgaaacacatacattgattgataaatcaaatcaaccttttggat |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
17957372 |
caaccaaaacacaaactaaaaatagaaatcaaccttttgaaacacgtacattgattgataaatcaaatcaaccttttggat |
17957292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 278
Target Start/End: Complemental strand, 17957237 - 17957192
Alignment:
| Q |
233 |
cttttgaaacacatacattgattgataaatcaaatcaaccttttgg |
278 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17957237 |
cttttgaagcacatacattgattgataaaacaaatcaaccttttgg |
17957192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 17957035 - 17956982
Alignment:
| Q |
225 |
aaatcaaccttttgaaacacatacattgattgataaatcaaatcaaccttttgg |
278 |
Q |
| |
|
|||| ||||||||||||||| ||||| || ||||||| |||||||||||||||| |
|
|
| T |
17957035 |
aaatgaaccttttgaaacacgtacatggaatgataaaacaaatcaaccttttgg |
17956982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 280
Target Start/End: Complemental strand, 17957156 - 17957088
Alignment:
| Q |
212 |
aaactaaaaatagaaatcaaccttttgaaacacatacattgattgataaatcaaatcaaccttttggat |
280 |
Q |
| |
|
|||| ||||| | |||||||| ||||||||||| ||||| || ||||||| ||| |||||||||||||| |
|
|
| T |
17957156 |
aaacgaaaaacacaaatcaacattttgaaacacctacatggaatgataaaacaagtcaaccttttggat |
17957088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University