View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14854_low_26 (Length: 288)
Name: NF14854_low_26
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 68 - 271
Target Start/End: Complemental strand, 14253246 - 14253043
Alignment:
| Q |
68 |
tgcataattagaatgagctctgttgcaggcgtttgttgctcagtcaaacaccgactagtggagggccaaagtattctatcactatggcagccagtattgg |
167 |
Q |
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| T |
14253246 |
tgcatagttagaatgagctctgttgcaggcgtttgttgctcagtcaaacaccgactagtggagggccaaagtattctatcactatggcagccagtattgg |
14253147 |
T |
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| Q |
168 |
tgaaagtggtaattcatcaggcaagacagtgagtcgtttccggacaggaaagagcaggcattcagctaatccaacatcagaatcagtatgtatcgaccag |
267 |
Q |
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| T |
14253146 |
tgaaagtggtaattcatcaggcaagacagtgagtcgtttccggacaggaaagagcaggcattcagctaatccaacatcagaatcagtatgtatcgaccag |
14253047 |
T |
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| Q |
268 |
atga |
271 |
Q |
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|||| |
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| T |
14253046 |
atga |
14253043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 148 - 271
Target Start/End: Complemental strand, 46714511 - 46714388
Alignment:
| Q |
148 |
actatggcagccagtattggtgaaagtggtaattcatcaggcaagacagtgagtcgtttccggacaggaaagagcaggcattcagctaatccaacatcag |
247 |
Q |
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| T |
46714511 |
actatgaccgccagtattggtgaaagtggtaattcatcaggcaagacagtgagttgtttccagacaggacagaccaatcattcagctattcgaacgtcag |
46714412 |
T |
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| Q |
248 |
aatcagtatgtatcgaccagatga |
271 |
Q |
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| T |
46714411 |
aatcagtacggatggaccagatga |
46714388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 46714632 - 46714549
Alignment:
| Q |
48 |
taataacttcatgttaaacctgcataattagaatgagctctgttgcaggcgtttgttgctcagtcaaacaccgactagtggagg |
131 |
Q |
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| T |
46714632 |
taataacttcgtcttaaacctgcataattagaatgagctccgttgcaggcgttcattgctcagtcaaacaccgattagtggagg |
46714549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 20060803 - 20060714
Alignment:
| Q |
73 |
aattagaatgagctctgttgcaggcgtttgttgctcagtcaaacaccgactagtggagggccaaagtattctatcactatggcagccagt |
162 |
Q |
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||||||||||||||| |||||||||||| |||||||||||| ||||| ||||||||| || |||| ||||| ||||||| || ||||| |
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| T |
20060803 |
aattagaatgagctccgttgcaggcgttccttgctcagtcaagtaccgattagtggaggaccgaagttttctaccactatgacaaccagt |
20060714 |
T |
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