View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14854_low_29 (Length: 271)
Name: NF14854_low_29
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_low_29 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr8 (6 HSPs) |
| |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0248 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 29532206 - 29532460
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
29532206 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtgaataattcaatattcgttaaaaca |
29532305 |
T |
|
| Q |
117 |
tggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29532306 |
tggagaaccctaaacccccaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaatag |
29532405 |
T |
|
| Q |
217 |
gttgaatgagagggatgaaaggctttgagtggagatgaatcaattttattttccc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29532406 |
gttgaatgagagggatgaaaggctttgagtggagatgaatcaattttgttttccc |
29532460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 46043168 - 46042944
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46043168 |
tgcagaaggattataacatatttgtatcagaccaaacatgattcataaaccccaaatcaaacaatcacagccagtgaataattcaatattcattaaaaca |
46043069 |
T |
|
| Q |
117 |
tggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46043068 |
tggagaaccctaaacccccaaatcaaacaaaacaatttcaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
46042969 |
T |
|
| Q |
217 |
gttgaatgagagggatgaaaggctt |
241 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
46042968 |
gtcgaatgagagggatgaaaggctt |
46042944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 46044042 - 46044237
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
46044042 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccaatgaataattcaatattcattaaaaca |
46044141 |
T |
|
| Q |
117 |
tggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgagga |
212 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46044142 |
tggagaaccctaaacccccaaatcaaacaaaacaatttcaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgagga |
46044237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 22973730 - 22973476
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
22973730 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagtcagtgaataattcaatattcattaaaaca |
22973631 |
T |
|
| Q |
117 |
tggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22973630 |
tggagaaccctaaacccccaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcatatccgcgaggaataa |
22973531 |
T |
|
| Q |
217 |
gttgaatgagagggatgaaaggctttgagtggagatgaatcaattttattttccc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
22973530 |
gttgaatgagagggatgaaaggctttgagtgaagatgaatcaattttgttttccc |
22973476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 8205241 - 8205492
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8205241 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtgaataattcaatattcattaaaaca |
8205340 |
T |
|
| Q |
117 |
tggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8205341 |
tggagaaccctaaacccccaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaa---tacttacttgcaaatccgcgaggaataa |
8205437 |
T |
|
| Q |
217 |
gttgaatgagagggatgaaaggctttgagtggagatgaatcaattttattttccc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8205438 |
gttgaatgagagggatgaaaggctttgagtggagatgaatcaattttgttttccc |
8205492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 22973860 - 22974106
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
22973860 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagctagtgaataattcaatattcattaaaaca |
22973959 |
T |
|
| Q |
117 |
tggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
22973960 |
tggagaaccctaaacccccaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcatatccgcgagtaataa |
22974059 |
T |
|
| Q |
217 |
gttgaatgagagggatgaaaggctttgagtggagatgaatcaatttt |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22974060 |
gttgaatgagagggatgaaaggctttgagtggagatgaatcaatttt |
22974106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 8204465 - 8204212
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| | |
|
|
| T |
8204465 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaacccaaaatcaaacaatcacaaccagtaa-taattcaatattcattaaaata |
8204367 |
T |
|
| Q |
117 |
tggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
216 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8204366 |
tggagaatcctaaaccgccaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
8204267 |
T |
|
| Q |
217 |
gttgaatgagagggatgaaaggctttgagtggagatgaatcaattttattttccc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8204266 |
gttgaatgagagggatgaaaggctttgagtggagatgaatcaattttgttttccc |
8204212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 38083351 - 38083127
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
38083351 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatgaaacaatcacaaccagtgaataattcaatattcattaaaaca |
38083252 |
T |
|
| Q |
117 |
tggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
38083251 |
tggagaaccctaaacccccaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttgcttgcaaattcgcgaggaataa |
38083152 |
T |
|
| Q |
217 |
gttgaatgagagggatgaaaggctt |
241 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38083151 |
gttgaatgagagggatgaaaggctt |
38083127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 38083564 - 38083764
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38083564 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtgaataattcaatattcatt------ |
38083657 |
T |
|
| Q |
117 |
tggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
216 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
38083658 |
---------ctaaacccccaaatcaaacaa---------aaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaattcacgaggaataa |
38083739 |
T |
|
| Q |
217 |
gttgaatgagagggatgaaaggctt |
241 |
Q |
| |
|
||||||||||| |||| |||||||| |
|
|
| T |
38083740 |
gttgaatgagatggattaaaggctt |
38083764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 13434033 - 13434279
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13434033 |
tgcagaaggattataacatatttgtatcagaccaaacatgattcataaaccccaaatcaaacaatcacagccagtgaataattcaatattcattaaaaca |
13434132 |
T |
|
| Q |
117 |
tggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
216 |
Q |
| |
|
|||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13434133 |
tggagaaccccaaaccccaaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
13434232 |
T |
|
| Q |
217 |
gttgaatgagagggatgaaaggctttgagtggagatgaatcaatttt |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13434233 |
gttgaatgagagggatgaaaggctttgagtggagatgaatcaatttt |
13434279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 13433290 - 13433042
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13433290 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaatcccaaatcaaacaatcacagccagtgaataattcaatattcattaaaaca |
13433191 |
T |
|
| Q |
117 |
tggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13433190 |
tggagaaccctaaacccccaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaa---tacttacttgcaaatccgcgaggaataa |
13433094 |
T |
|
| Q |
217 |
gttgaatgagagggatgaaaggctttgagtggagatgaatcaattttatttt |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
13433093 |
gttgaatgagagggatgaaaggctttgagtcgagatgaatcaattttgtttt |
13433042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 40907351 - 40907575
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40907351 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtgaataattcaatattcattaaaaca |
40907450 |
T |
|
| Q |
117 |
tggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40907451 |
tggagaaccctaaacccccaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaattcgcgaggaataa |
40907550 |
T |
|
| Q |
217 |
gttgaatgagagggatgaaaggctt |
241 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
40907551 |
gttgaatgagagggatgaaaggctt |
40907575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 32256988 - 32256764
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
32256988 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtgaataattcaatattcattaaaata |
32256889 |
T |
|
| Q |
117 |
tggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
216 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32256888 |
tggagaaccataaactcccaaatcaaacaaaacaatttcaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
32256789 |
T |
|
| Q |
217 |
gttgaatgagagggatgaaaggctt |
241 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
32256788 |
gttgaatgagagggatgaaaggctt |
32256764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 40907138 - 40906914
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
40907138 |
tgcagaaggattataacatatttgtatcagaccaaacatgattcataaaccccaaatcaaacaatcacaaccaatgaataattcaatattcattaaaaca |
40907039 |
T |
|
| Q |
117 |
tggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40907038 |
tggagaaccctaaacccccaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaattcgcgaggaataa |
40906939 |
T |
|
| Q |
217 |
gttgaatgagagggatgaaaggctt |
241 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
40906938 |
gttgaatgaaagggatgaaaggctt |
40906914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 83 - 241
Target Start/End: Original strand, 32257343 - 32257501
Alignment:
| Q |
83 |
acagccagtaaataattcaatattcattaaaacatggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaag |
182 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32257343 |
acagccagtgataaattcaatattcattaaaacatggagaaccctaaacccccaaatcaaacaaaacaatttcaaccatttaaatagcaattaaaacaat |
32257442 |
T |
|
| Q |
183 |
aaaacttacttacttgcaaatccgcgaggaataagttgaatgagagggatgaaaggctt |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32257443 |
aaaacttacttacttgcaaatccgcgaggaataagttgaatgagagggatgaaaggctt |
32257501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 19878508 - 19878284
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19878508 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtgaataattcaatattcattaaaaca |
19878409 |
T |
|
| Q |
117 |
tggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19878408 |
tggagaaccctaaacccccaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
19878309 |
T |
|
| Q |
217 |
gttgaatgagagggatgaaaggctt |
241 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
19878308 |
gttgaatgagagggatgaaaagctt |
19878284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 19879631 - 19879855
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19879631 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtgaataattcaatattcattaaaaca |
19879730 |
T |
|
| Q |
117 |
tggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
216 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19879731 |
tggagaaccctaaacacccaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
19879830 |
T |
|
| Q |
217 |
gttgaatgagagggatgaaaggctt |
241 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
19879831 |
gttgaatgagagggatgaaatgctt |
19879855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 42880 - 43104
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
42880 |
tgcagaaggattataacatatttgtatcagaccaaacatgattcataaaccccaaatcaaacaatcacaaccaatgaataattcaatattcattaaaaca |
42979 |
T |
|
| Q |
117 |
tggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataa |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42980 |
tggagaaccctaaacccccaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaattcgcgaggaataa |
43079 |
T |
|
| Q |
217 |
gttgaatgagagggatgaaaggctt |
241 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
43080 |
gttgaatgaaagggatgaaaggctt |
43104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 88 - 241
Target Start/End: Complemental strand, 65672 - 65519
Alignment:
| Q |
88 |
cagtaaataattcaatattcattaaaacatggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaac |
187 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
65672 |
cagtgaataattcaatattcattaaaacatggagaaccctaaacccccaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaaac |
65573 |
T |
|
| Q |
188 |
ttacttacttgcaaatccgcgaggaataagttgaatgagagggatgaaaggctt |
241 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
65572 |
ttacttacttgcaaattcgcgaggaataagttgaatgagagggatgaaaggctt |
65519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 278704 - 278516
Alignment:
| Q |
53 |
catgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaacatggagaaccctaaacccccaaatcaaataaaacaat |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
278704 |
catgattcataaaccccaaatcaaacaatcacagccagtgaataattcaatattcattaaaacatggagaaccctaaacccccaaatcaaacaaaacaat |
278605 |
T |
|
| Q |
153 |
ttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataagttgaatgagagggatgaaaggctt |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
278604 |
ttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataagttgaatgagagggatgaaaggctt |
278516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 1541612 - 1541800
Alignment:
| Q |
33 |
catatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaacatggagaaccctaaacc |
132 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
1541612 |
catatttgtatcagaccaaacatgattcataaaccccaaattaaacaatcacagacagtgaataattcaatattcattaaaatatgaagaaccctaaacc |
1541711 |
T |
|
| Q |
133 |
cccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataagttga |
221 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1541712 |
cccaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataagttga |
1541800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 17771660 - 17771848
Alignment:
| Q |
33 |
catatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaacatggagaaccctaaacc |
132 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
17771660 |
catatttgtatcagaccaaacatgattcataaaccccaaattaaacaatcacagacagtgaataattcaatattcattaaaatatgaagaaccctaaacc |
17771759 |
T |
|
| Q |
133 |
cccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataagttga |
221 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17771760 |
cccaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatccgcgaggaataagttga |
17771848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 17752332 - 17752216
Alignment:
| Q |
105 |
ttcattaaaacatggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17752332 |
ttcattaaaacatggagaaccctaaacccccaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttactttcaaatc |
17752233 |
T |
|
| Q |
205 |
cgcgaggaataagttga |
221 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
17752232 |
cgcgaggaataagttga |
17752216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 105 - 219
Target Start/End: Complemental strand, 1534122 - 1534008
Alignment:
| Q |
105 |
ttcattaaaacatggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1534122 |
ttcattaaaacatggagaaccctaaacccccaaatcaaacaaaacaatttgaatcatttaaatagcaattaaaacaagaaaacttacttactttcaaatc |
1534023 |
T |
|
| Q |
205 |
cgcgaggaataagtt |
219 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1534022 |
cgcgaggaataagtt |
1534008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 1540955 - 1541011
Alignment:
| Q |
62 |
taaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaacatg |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
1540955 |
taaaccccaaatcaaacaatcacaaccagtgaataattcaatattcattaaaacatg |
1541011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 17771003 - 17771059
Alignment:
| Q |
62 |
taaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaaacatg |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
17771003 |
taaaccccaaatcaaacaatcacaaccagtgaataattcaatattcattaaaacatg |
17771059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 36224809 - 36224858
Alignment:
| Q |
221 |
aatgagagggatgaaaggctttgagtggagatgaatcaattttattttcc |
270 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||||||||||||| |||||| |
|
|
| T |
36224809 |
aatgagaggggagaaagggtttgagtgtagatgaatcaattttgttttcc |
36224858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 105 - 241
Target Start/End: Original strand, 15320 - 15456
Alignment:
| Q |
105 |
ttcattaaaacatggagaaccctaaacccccaaatcaaataaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15320 |
ttcattaaaacatggagaaccctaaacccccaaatcaaacaaaacaatttgaaccatttaaatagcaattaaaacaagaaaacttacttacttgcaaatc |
15419 |
T |
|
| Q |
205 |
cgcgaggaataagttgaatgagagggatgaaaggctt |
241 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15420 |
cgcaaggaataagttgaatgagagggatgaaaggctt |
15456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 15031 - 15127
Alignment:
| Q |
17 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagccagtaaataattcaatattcattaaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
15031 |
tgcagaaggattataacatatttgtatcagaccaagcatgattcataaaccccaaatcaaacaatcacagtcagtgaataattcaatattcattaaa |
15127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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