View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14854_low_38 (Length: 225)
Name: NF14854_low_38
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_low_38 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8695186 - 8694962
Alignment:
| Q |
1 |
tattactttttacatcatctatctctatcacatcatctacttatcgcgcttattacatcactctctatttctatctttcttaacgttaaaacaaaagaat |
100 |
Q |
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| T |
8695186 |
tattactttttacatcatctatttctatcacatcatctacttatcgcgcttattacatcactctctatttctatctttcttaacgttaaaacgaaagaat |
8695087 |
T |
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| Q |
101 |
ctctaaattttcagagaacttcacctctaccctcccatgtttatccaacaaagatgcgtttgaaaatttgactaatctttgnnnnnnntacataagcttt |
200 |
Q |
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||||||||||||| |||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
8695086 |
ctctaaattttcacagaatttcacctctatcctcccatgtatatccaacaaagatgcgtttgaaaatttgactaatcttcgaaaaaaatacataagcttt |
8694987 |
T |
|
| Q |
201 |
taccacctataaaaacctaaaagcc |
225 |
Q |
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| T |
8694986 |
taccacctataaaaacctaaaagcc |
8694962 |
T |
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