View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14854_low_5 (Length: 624)
Name: NF14854_low_5
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 15 - 610
Target Start/End: Original strand, 28282051 - 28282647
Alignment:
| Q |
15 |
cataggctgggaacaatttacggatgctgttatcaaaacgatctcagagaagaaggaaggacttgtgtttctgctgtggggagagtatgctcaggagaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28282051 |
cataggctgggaacaatttacggatgctgttatcaaaacgatctcagagaagaaggaaggacttgtgtttctgctgtggggagagtatgctcaggagaaa |
28282150 |
T |
|
| Q |
115 |
attcagtactgccattagttgattctataaatttggcataattgtttattttagcggaatgggcgacaagcaagttattcttctcactttgggtgtctta |
214 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28282151 |
attcggtactgccattagttgattctataaatttggcgtaattgtttattttagcggaatgggcgacaagcaagttattcttctcactttgggtgtctta |
28282250 |
T |
|
| Q |
215 |
tattcagcttaattgatcaaaccaagcatcatattctgaaagctgaacatccttctggagctaatgtgaaaggaggtttcttcggctgcaagtaagttag |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28282251 |
tattcagcttaattgatcaaaccaagcatcatattctgaaagctgaacatccttctggagctactgtgaaaggaggtttcttcggctgcaagtaagttag |
28282350 |
T |
|
| Q |
315 |
tttttgcattatttttattgtgttaatataacagtgttgtaaagtatgtttgaaatttctgcttaatgtatatataaaataggcattcacgacgaggctt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28282351 |
tttttgcattatttttattgtgttaatataacagtgttgtaaagtatgtttgaactttctgcttaatgtatatataaaataggcattcacgacgaggctt |
28282450 |
T |
|
| Q |
415 |
aagtttgtctgaaatataagggcacatgagacagttgttatgaagaaatagtaaattagaaaaaatgtgcgcagcagagtgatatatatgaaccttcttt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
28282451 |
aagtttgtctgaaatataagggcacatgagacagttgttatgaagaaatagtaaattagaaaaaatgtgcgcagcaaagtgatatatatgaaccttcttt |
28282550 |
T |
|
| Q |
515 |
gtgcatatacagttttttgatataatttatcttccatttctgcatttatcaaagc-nnnnnnngtcccaagataattcttgttggagcctgaaaggt |
610 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28282551 |
gtgcatatacagttgtttgatataatttatcttccatttctgcatttatcaaagcttttttttgtcccaagataattcttgttggagcctgaaaggt |
28282647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 28290327 - 28290624
Alignment:
| Q |
16 |
ataggctgggaacaatttacggatgctgttatcaaaacgatctcagagaagaaggaaggacttgtgtttctgctgtggggagagtatgctcaggagaaaa |
115 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||| |||||||| |||||||||||||| | ||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
28290327 |
ataggctgggaacaattcacagatgttgttatcaagacgatctctgagaagaaggaaggggtcgtgtttctgatgtggggagagtctgctcaggagaaaa |
28290426 |
T |
|
| Q |
116 |
ttcagtactgccattagttgattctataaatttggcataattgtttattttagcggaatgggcgacaagcaagttattcttctcactttggg--tgtctt |
213 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||| || |||||| |
|
|
| T |
28290427 |
ttcggtactgccattagttgatt-tataaatttggcgtaattgtttattttagcggaatgggtgacaagcaagttattctgcttacttttggtatgtctt |
28290525 |
T |
|
| Q |
214 |
atattcagcttaattgatcaaaccaagcatcatattctgaaagctgaacatccttctggagctaatgtgaaaggaggtttcttcggctgcaagtaagtt |
312 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| |||||||||||||| || | | ||||||| |||||||||| ||||||||||||||| |
|
|
| T |
28290526 |
atatgcagcttaattgatcaaaccaagcatcacattctaaaagctgaacatccctccgtgttgactgtgaaaagaggtttctttggctgcaagtaagtt |
28290624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 223 - 510
Target Start/End: Complemental strand, 29558432 - 29558152
Alignment:
| Q |
223 |
ttaattgatcaaaccaagcatcatattctgaaagctgaacatccttctggagctaatgtgaaaggaggtttcttcggctgcaagtaagttagtttttgca |
322 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||| | | ||||||| |||||||||||||||||||||||| | ||||||||| |
|
|
| T |
29558432 |
ttaattgatcaaaccaagcatcacattctgaaagctgagcatccttccgtgttgactgtgaaaagaggtttcttcggctgcaagtaaggttgtttttgca |
29558333 |
T |
|
| Q |
323 |
ttatttttattgtgttaatataacagtgttgtaaagtatgtttgaaatttctgcttaatgtatatataaaataggcattcacgacgaggcttaagtttgt |
422 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| || || | ||| | |||||| ||||||||||||||||| |
|
|
| T |
29558332 |
ttatatttattgtgttaatataacagtgttgtaaagtatgtttgaactttctgctt--tg-attt-----atatgtattcacaacgaggcttaagtttgt |
29558241 |
T |
|
| Q |
423 |
ctgaaatataagggcacatgagacagttgttatgaagaaatagtaaatta-gaaaaaatgtgcgcagcagagtgatatatatgaacctt |
510 |
Q |
| |
|
|||||| | || ||||||||||||| |||||||||||||||| |||||| |||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
29558240 |
ctgaaaaagaacggcacatgagacatttgttatgaagaaataccaaattaggaaaaaatatgtgcagcagagtgatagatatgaacctt |
29558152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 28303078 - 28303174
Alignment:
| Q |
18 |
aggctgggaacaatttacggatgctgttatcaaaacgatctcagagaagaaggaaggacttgtgtttctgctgtggggagagtatgctcaggagaaa |
114 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| || |||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
28303078 |
aggctgggaacaatttactgatactgttatcaagacaatctcacagaagaaggaaggagttgtgtttctgctgtggggaaagtctgctcaggagaaa |
28303174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 287 - 390
Target Start/End: Original strand, 28278569 - 28278672
Alignment:
| Q |
287 |
gaggtttcttcggctgcaagtaagttagtttttgcattatttttattgtgttaatataacagtgttgtaaagtatgtttgaaatttctgcttaatgtata |
386 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| ||||| |||| ||||| |
|
|
| T |
28278569 |
gaggtttctttagctgcaagtaagttggtttttgcattctatttattgtgttaatatagcagtgttataaagtatgtttgaactttcttcttagtgtatg |
28278668 |
T |
|
| Q |
387 |
tata |
390 |
Q |
| |
|
|||| |
|
|
| T |
28278669 |
tata |
28278672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 210 - 375
Target Start/End: Original strand, 19251144 - 19251309
Alignment:
| Q |
210 |
tcttatattcagcttaattgatcaaaccaagcatcatattctgaaagctgaacatccttctggagctaa-tgtgaaaggaggtttcttcggctgcaagta |
308 |
Q |
| |
|
|||||| | |||| |||||||| |||||||||||| ||||| ||||||| |||||| |||| || | | ||||||| ||||||||| ||||||||||| |
|
|
| T |
19251144 |
tcttatgtgcagcataattgatgcaaccaagcatcacattctaaaagctgcacatccctctg-agttgactgtgaaaaaaggtttctttggctgcaagta |
19251242 |
T |
|
| Q |
309 |
agttagtttttgcattatttttattgtgttaatataacagtgttgtaaagtatgtttgaaatttctg |
375 |
Q |
| |
|
|| | ||||||||| || |||| |||||||||||| |||||||||||| |||||||||| |||||| |
|
|
| T |
19251243 |
agatgatttttgcataatatttactgtgttaatatagcagtgttgtaaaatatgtttgaactttctg |
19251309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 29558696 - 29558598
Alignment:
| Q |
16 |
ataggctgggaacaatttacggatgctgttatcaaaacgatctcagagaagaaggaaggacttgtgtttctgctgtggggagagtatgctcaggagaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| || |||||||||||||| || | | ||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
29558696 |
ataggctgggaacaatttacggattctgttatcaagacaatctcagagaagaaagatagtgtcatgtttctgcagtgggcagagtctgctcaggagaaa |
29558598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 536 - 566
Target Start/End: Original strand, 28303742 - 28303772
Alignment:
| Q |
536 |
ataatttatcttccatttctgcatttatcaa |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
28303742 |
ataatttatcttccatttctgcatttatcaa |
28303772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University