View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14854_low_7 (Length: 579)
Name: NF14854_low_7
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 26 - 569
Target Start/End: Original strand, 8722053 - 8722592
Alignment:
| Q |
26 |
tatgttgaaaagtatactcacatttcattagagaaacaaatttaagggacattatgataaattaaaccttgatcattcctcttgaacccaagcaaacatt |
125 |
Q |
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| T |
8722053 |
tatgttgaaaagtatactcacatttcattagagaaacaaatttaagggacattatgataaattaaaccttgatcattcctcttgaacccaagcaaacatt |
8722152 |
T |
|
| Q |
126 |
gcaattgcaattcttacggcaaaaggggcacctctctctgatatctccaattgacatattggggtacctatgtgcaaaatgnnnnnnncaatagttacat |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
8722153 |
gcaattgcaattcttacggcaaaaggggcacctctctctgatatctccaattgacatattggggtacctatgtgcaaaatgaaaaaaacaataattacat |
8722252 |
T |
|
| Q |
226 |
tttgcaaaagttctaatttgataaattatattaacaaatacatgactttggaatggttatttagatgtaatccaaaacgtaccattgtttaatacatctt |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8722253 |
tttgcaaaagttctaatttgataaattatattaacaaatacatgactttggaatggttatttagatgtaatccaaaacgtaccattgtttaatacatctt |
8722352 |
T |
|
| Q |
326 |
aaacagtatattttctgacattttgtacaaggtacaaattgtggcctatcctttctcaagcactgatgacatgttttgatattttgttcagtttcctgtg |
425 |
Q |
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| T |
8722353 |
aaacagtatattttctgacattttgtacaaggtacaaattgtggcctatcctttctcaagcactgatgacatgttttgatattttgttcagtttcctgtg |
8722452 |
T |
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| Q |
426 |
attatttaacacaagttgcatttaattaattaagctatggtataaattataatgcttaagcaaccaaaatagttgtcataaaggaattaaataagcatcg |
525 |
Q |
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| T |
8722453 |
attatttaacacaagttgcat----ttaattaagctatggtataaattataatgcttaagcaaccaaaatagttgtcataaaggaattaaataagcatcg |
8722548 |
T |
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| Q |
526 |
agaaagacactaaccattatattatccaactttcctttgcttct |
569 |
Q |
| |
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| T |
8722549 |
agaaagacactaaccattatattatccaactttcctttgcttct |
8722592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 569
Target Start/End: Original strand, 8593871 - 8594402
Alignment:
| Q |
18 |
tatattactatgttgaaaagtatactcacatttcattagagaaacaaatttaagggacattatg--ataaattaaaccttgatcattcctcttgaaccca |
115 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
8593871 |
tatattactaaattgaaaagtatactcacatttcattagacaaacaaatttaagggacattatataataaattaaaccttgatcattcctcttgaacaca |
8593970 |
T |
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| Q |
116 |
agcaaacattgcaattgcaattcttacggcaaaaggggcacctctctctgatatctccaattgacatattggggtacctatgtgc-aaaatgnnnnnnnc |
214 |
Q |
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| T |
8593971 |
agcaaacattgcaattgcaattcttacgacaaaatgggcacctctctgcaatatctccaattgacatattggggtacctatatgcgaaaatgaaaa---- |
8594066 |
T |
|
| Q |
215 |
aatagttacattttgcaaaagttctaatttgataaattatattaacaaatacatgac-tttggaatggttatttagatgtaatccaaaacgtaccattgt |
313 |
Q |
| |
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|||||| |||||||||||| ||| |||||| |||||||||||||||||||| |||| ||||||||||||||||||||||| || ||||||||||| ||| |
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| T |
8594067 |
aatagtcacattttgcaaa-gttataatttcataaattatattaacaaatatgtgacctttggaatggttatttagatgta-tctaaaacgtaccaatgt |
8594164 |
T |
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| Q |
314 |
ttaatacatcttaaacagtatattttctgacattttgtacaaggtacaaattgtggcctatcctttctcaagcactgatgacatgttttgatattttgtt |
413 |
Q |
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| T |
8594165 |
ttaatacatgttaaacaatacattttctgacattttgtgcaaggtacaaattgtggcctatcctttctcaagcactgatgacatgttttgatattttgtt |
8594264 |
T |
|
| Q |
414 |
cagtttcctgtgattatttaacacaagttgcatttaattaattaagctatggtataaattataatgcttaagcaaccaaaatagttgtcataaaggaatt |
513 |
Q |
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| T |
8594265 |
tgatgtcctgcaattatttaacacaagttgcatttaattaaa----ctatggtataaattataatgcttaagctaccaaaatagttgtc----------- |
8594349 |
T |
|
| Q |
514 |
aaataagcatcgagaaagacactaaccattatattatccaactttcctttgcttct |
569 |
Q |
| |
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|||||||| |||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
8594350 |
--ataagcattgagaaa-acactaaccattatattatccaattttcctttgcttct |
8594402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 8677212 - 8677327
Alignment:
| Q |
18 |
tatattactatgttgaaaagtatactcacatttcattagagaaacaaatttaagggac------attatgataaattaaaccttgatcattcctcttgaa |
111 |
Q |
| |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| ||| |
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| T |
8677212 |
tatattactaagttgaaaagtatactcacgtttcattagagaaacaaatttaagggacattatgattatgataaatgacaccttgatcattcctctggaa |
8677311 |
T |
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| Q |
112 |
cccaagcaaacattgc |
127 |
Q |
| |
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| T |
8677312 |
cacaagcaaacattgc |
8677327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 80 - 535
Target Start/End: Complemental strand, 21239942 - 21239488
Alignment:
| Q |
80 |
tgataaattaaaccttgatcattcctcttgaacccaagcaaacattgcaattgcaattcttacggcaaaaggggcacctctctctgatatctccaattga |
179 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||| ||| |
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| T |
21239942 |
tgataaattaaactttgatcattcctcttgaacacaagcaaacattgcaattccaattcttacagcaaaaggggcacctctctccgatatctccaactga |
21239843 |
T |
|
| Q |
180 |
catattggggtacctatgtgcaaaa-tgnnnnnnncaatagttacattttgcaaaagttctaatttgataaattatat--taacaaatacatgactttgg |
276 |
Q |
| |
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||||||||||||||||||||||||| || | ||||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||||| |
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| T |
21239842 |
catattggggtacctatgtgcaaaaatgaaaaaaaaagtagttacatttatgaaaagttctaattggataagttatatattaacaaatacatgactttga |
21239743 |
T |
|
| Q |
277 |
aatggttatttagatgtaatccaaaacgtaccattgtttaatacatcttaaacagtatattttctgacattttgtacaaggtacaaattgtggcctatcc |
376 |
Q |
| |
|
||||| ||||||||||||||| ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21239742 |
aatggctatttagatgtaatctaaaacataccattgtttaatgcatctaaaacaatatattttctgacattttgttcaaggtacaaattgtggcctatcc |
21239643 |
T |
|
| Q |
377 |
tttctcaagcactgatgacatgttttgatattttgttcagtttcctgtgattatttaacacaagttgcatttaattaattaagctatggtataaattata |
476 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21239642 |
tttctcaagcattgatgacatgttttgatattttgttcggtttcctttaattatttaacacaagttgcatttaa----ttaagctatggtataaattata |
21239547 |
T |
|
| Q |
477 |
atgcttaagcaaccaaaatagttgtcataaaggaattaaataagcatcgagaaagacac |
535 |
Q |
| |
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||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
21239546 |
atgcttaagcaaccaaaatagttctcataaaggaataaaataagcatcgagaaagacac |
21239488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 449
Target Start/End: Original strand, 1778305 - 1778394
Alignment:
| Q |
358 |
tacaaattgtggcctatcctttctcaagcactgatgacatgttttgatattttgttcagtttcctgtgattatttaacacaagttgcattta |
449 |
Q |
| |
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|||||| |||||| | || ||| ||||||| |||||||||||||| | ||| |||| || || ||| |||||||||||||||||||||||| |
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| T |
1778305 |
tacaaactgtggcatgtcatttttcaagcagtgatgacatgtttttacatt--gttcggtgtcttgtaattatttaacacaagttgcattta |
1778394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 155
Target Start/End: Original strand, 55413165 - 55413237
Alignment:
| Q |
83 |
taaattaaaccttgatcattcctcttgaacccaagcaaacattgcaattgcaattcttacggcaaaaggggca |
155 |
Q |
| |
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|||| |||||||| || ||||| |||||| || ||||||||||||||||||||| ||| |||||| ||||| |
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| T |
55413165 |
taaagtaaaccttaattgttccttttgaacgcaggcaaacattgcaattgcaatttttaatgcaaaatgggca |
55413237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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