View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14854_low_8 (Length: 555)
Name: NF14854_low_8
Description: NF14854
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14854_low_8 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Original strand, 45174379 - 45174933
Alignment:
| Q |
1 |
tacataggtgaatgaataaacagaaagcagaagtcatggattgctatcaatactggtagttttctttttaggaactgtcaatggtctttggatttgcttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45174379 |
tacataggtgaatgaataaacagaaagcagaagtcatggattgctatcaatactggtagttttctttttaggaactgtcaatggtctttggatttgcttg |
45174478 |
T |
|
| Q |
101 |
atgtttgggctcctatgggtccgaaaggtcctgtcagggaagaggcctggaagattttgacggctgggttggttgatcggtatgaggagatgattgagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45174479 |
atgtttgggctcctatgggtccgaaaggtcctgtcagggaagaggcctggaagattttgacggctgggttggttgatcggtatgaggagatgattgagaa |
45174578 |
T |
|
| Q |
201 |
gtatcatccgggtttaggggatgagaggtggccgtttgtgactcattttgtgggttgtaatccgtgtggaagttatggtgattatccagttgagaggtgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45174579 |
gtatcatccgggtttaggggatgagaggtggccgtttgtgactcattttgtgggttgtaatccgtgtggaagttatggtgattatccagttgagaggtgt |
45174678 |
T |
|
| Q |
301 |
cctagtagcatggaaagggctttcaatttcgctgataatcaggtgctcaaactctacgggttcggtgatcttcatgaatatggtcaacagctaccaactt |
400 |
Q |
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| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
45174679 |
cttagtagcatggaaagggctatcaatttcgctgataatcaggtgctcaaactctacgggttcggtgatcttcatgaatatggtcaatagctaccaactt |
45174778 |
T |
|
| Q |
401 |
cacaaatcttagccaataagttaaccacttttgcagccaaagctttgtgtcgatctatcagtacttcattcatttgcgcaatttactgcaaaagttgggc |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45174779 |
cacaaatcttagccaataagttaaccacttttgcagccaaagctttgtgacgatctatcagtacttcattcatttgcgcaatttactgcaaaagttgggc |
45174878 |
T |
|
| Q |
501 |
agttttctgtaaataaaacaaatagagttaacaaaggaacaccgtagaaatggaa |
555 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45174879 |
agttttctgtaaataaaacaaatagagttagcaaaggaacaccgtagaaatggaa |
45174933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 162 - 363
Target Start/End: Original strand, 45168982 - 45169183
Alignment:
| Q |
162 |
ggctgggttggttgatcggtatgaggagatgattgagaagtatcatccgggtttaggggatgagaggtggccgtttgtgactcattttgtgggttgtaat |
261 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45168982 |
ggctgggttggttgatcggtatgaggagatgattgagaagtatcatccgggtttaggggatgagaggtggccgtttgtgactcattttgtgggttgtaag |
45169081 |
T |
|
| Q |
262 |
ccgtgtggaagttatggtgattatccagttgagaggtgtcctagtagcatggaaagggctttcaatttcgctgataatcaggtgctcaaactctacgggt |
361 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45169082 |
ccgtgtggaagttatggtgattatccggttgagaggtgtcttagtagcatggaaagggctttcaacttcgctgataatcaggtgctcaaactctacgggt |
45169181 |
T |
|
| Q |
362 |
tc |
363 |
Q |
| |
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|| |
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| T |
45169182 |
tc |
45169183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 368 - 555
Target Start/End: Original strand, 45174129 - 45174316
Alignment:
| Q |
368 |
atcttcatgaatatggtcaacagctaccaacttcacaaatcttagccaataagttaaccacttttgcagccaaagctttgtgtcgatctatcagtacttc |
467 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
45174129 |
atcttcatgaatatggtcaatagctaccaaattcccaaaccttagccaataagttaaccacttttgcagccaaagctttgtggcgatctatcagtatatt |
45174228 |
T |
|
| Q |
468 |
attcatttgcgcaatttactgcaaaagttgggcagttttctgtaaataaaacaaatagagttaacaaaggaacaccgtagaaatggaa |
555 |
Q |
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|||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45174229 |
gttcatttgcgcaatttggtgcaaaggctgggcagttttctgtaaataaaacaaatagagttagcaaaggaacaccgtagaaatggaa |
45174316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 26 - 165
Target Start/End: Original strand, 45168714 - 45168853
Alignment:
| Q |
26 |
agcagaagtcatggattgctatcaatactggtagttttctttttaggaactgtcaatggtctttggatttgcttgatgtttgggctcctatgggtccgaa |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45168714 |
agcagaagtcatggattgctatcaatactggtagttttctttttaggaattgtcagtggtctttggatttgcttgatgtttgggctcctatgggtccgaa |
45168813 |
T |
|
| Q |
126 |
aggtcctgtcagggaagaggcctggaagattttgacggct |
165 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||||| |
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| T |
45168814 |
aggtcctgtcagggaagaggcgggaaagattttgacggct |
45168853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 421 - 518
Target Start/End: Original strand, 45183458 - 45183555
Alignment:
| Q |
421 |
ttaaccacttttgcagccaaagctttgtgtcgatctatcagtacttcattcatttgcgcaatttactgcaaaagttgggcagttttctgtaaataaaa |
518 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||||||||||| |
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| T |
45183458 |
ttaaccacttttgcagccaaagctttgtggcgatctatcagtatttcattcatttgcgcaatctggtgcaaaagttgggcaattttctgtaaataaaa |
45183555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 169 - 300
Target Start/End: Original strand, 49679470 - 49679601
Alignment:
| Q |
169 |
ttggttgatcggtatgaggagatgattgagaagtatcatccgggtttaggggatgagaggtggccgtttgtgactcattttgtgggttgtaatccgtgtg |
268 |
Q |
| |
|
||||||||| | ||||| |||||||||||||| |||||||| ||||| || ||| | || ||||| |||| |||||||||||||| ||||| || |||| |
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| T |
49679470 |
ttggttgatagatatgaagagatgattgagaattatcatcctggttttggtgatcatagatggccccttgttactcattttgtggggtgtaaaccttgtg |
49679569 |
T |
|
| Q |
269 |
gaagttatggtgattatccagttgagaggtgt |
300 |
Q |
| |
|
| | | ||||||||| || |||||||||||| |
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| T |
49679570 |
ggaaatttggtgattaccctgttgagaggtgt |
49679601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 462
Target Start/End: Original strand, 45170400 - 45170463
Alignment:
| Q |
399 |
ttcacaaatcttagccaataagttaaccacttttgcagccaaagctttgtgtcgatctatcagt |
462 |
Q |
| |
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|||||||| |||||||||| |||||||||||||||| |||||||||||||| | ||||||||| |
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| T |
45170400 |
ttcacaaaccttagccaattagttaaccacttttgcggccaaagctttgtgacattctatcagt |
45170463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 162 - 362
Target Start/End: Complemental strand, 13714045 - 13713845
Alignment:
| Q |
162 |
ggctgggttggttgatcggtatgaggagatgattgagaagtatcatccgggtttaggggatgagaggtggccgtttgtgactcattttgtgggttgtaat |
261 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||| | ||||||||||||||||| |||||||| ||||| ||||| ||||| |
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| T |
13714045 |
ggctgggttggttgatcggtatgaagagatgatggagaagtatcatccggggcttggggatgagaggtggccttttgtgacgcatttcgtggggtgtaag |
13713946 |
T |
|
| Q |
262 |
ccgtgtggaagttatggtgattatccagttgagaggtgtcctagtagcatggaaagggctttcaatttcgctgataatcaggtgctcaaactctacgggt |
361 |
Q |
| |
|
|| ||||| |||||||| ||||||||||| ||||| || | |||||||||||| |||||||| ||||| || |||||||| ||||| |||||||| |||| |
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| T |
13713945 |
ccttgtgggagttatggagattatccagtagagagatgccttagtagcatggagagggcttttaattttgcagataatcaagtgcttaaactctatgggt |
13713846 |
T |
|
| Q |
362 |
t |
362 |
Q |
| |
|
| |
|
|
| T |
13713845 |
t |
13713845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 13714257 - 13714175
Alignment:
| Q |
82 |
tggtctttggatttgcttgatgtttgggctcctatgggtccgaaaggtcctgtcagggaagaggcctggaagattttgacggc |
164 |
Q |
| |
|
||||| |||||||||||||||| |||||| ||||||||||||||||| || || | || ||||| |||||||||||||||| |
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| T |
13714257 |
tggtcgttggatttgcttgatgcttgggcccctatgggtccgaaaggcccaatccgagaggaggctgggaagattttgacggc |
13714175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 169 - 269
Target Start/End: Complemental strand, 20181034 - 20180934
Alignment:
| Q |
169 |
ttggttgatcggtatgaggagatgattgagaagtatcatccgggtttaggggatgagaggtggccgtttgtgactcattttgtgggttgtaatccgtgtg |
268 |
Q |
| |
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||||||||| | |||||||||||||||||||| |||||||| ||||| || ||| | |||||||| || ||||||||||||||||| ||||| || |||| |
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| T |
20181034 |
ttggttgatagatatgaggagatgattgagaattatcatcctggttttggtgatcataggtggccattggtgactcattttgtggggtgtaagccttgtg |
20180935 |
T |
|
| Q |
269 |
g |
269 |
Q |
| |
|
| |
|
|
| T |
20180934 |
g |
20180934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 20181286 - 20181210
Alignment:
| Q |
49 |
aatactggtagttttctttttaggaactgtcaatggtctttggatttgcttgatgtttgggctcctatgggtccgaa |
125 |
Q |
| |
|
|||||||| |||||| | || ||||||||||| ||||| |||||| | ||||||| |||||| || ||||| ||||| |
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| T |
20181286 |
aatactgggagttttttgttgaggaactgtcagtggtcattggatattcttgatgcttgggcaccaatgggaccgaa |
20181210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 169 - 269
Target Start/End: Complemental strand, 44268382 - 44268282
Alignment:
| Q |
169 |
ttggttgatcggtatgaggagatgattgagaagtatcatccgggtttaggggatgagaggtggccgtttgtgactcattttgtgggttgtaatccgtgtg |
268 |
Q |
| |
|
||||||||| | |||||||||||||||||||| |||||||| ||||| || ||| | |||||||| || ||||||||||||||||| ||||| || |||| |
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| T |
44268382 |
ttggttgatagatatgaggagatgattgagaattatcatcctggttttggtgatcataggtggccattggtgactcattttgtggggtgtaagccttgtg |
44268283 |
T |
|
| Q |
269 |
g |
269 |
Q |
| |
|
| |
|
|
| T |
44268282 |
g |
44268282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 44268634 - 44268558
Alignment:
| Q |
49 |
aatactggtagttttctttttaggaactgtcaatggtctttggatttgcttgatgtttgggctcctatgggtccgaa |
125 |
Q |
| |
|
|||||||| |||||| | || ||||||||||| ||||| |||||| | ||||||| |||||| || ||||| ||||| |
|
|
| T |
44268634 |
aatactgggagttttttgttgaggaactgtcagtggtcattggatattcttgatgcttgggcaccaatgggaccgaa |
44268558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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