View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14855_high_13 (Length: 305)

Name: NF14855_high_13
Description: NF14855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14855_high_13
NF14855_high_13
[»] chr6 (2 HSPs)
chr6 (1-189)||(30064748-30064936)
chr6 (245-290)||(30064992-30065037)
[»] chr4 (2 HSPs)
chr4 (1-189)||(3685403-3685591)
chr4 (245-290)||(3685300-3685345)
[»] chr3 (6 HSPs)
chr3 (1-189)||(32023893-32024082)
chr3 (6-189)||(51142953-51143136)
chr3 (61-189)||(48447951-48448079)
chr3 (245-290)||(32024139-32024184)
chr3 (245-290)||(48448148-48448193)
chr3 (245-290)||(51142839-51142884)
[»] chr8 (4 HSPs)
chr8 (5-189)||(44616326-44616509)
chr8 (245-290)||(5963371-5963416)
chr8 (245-290)||(44616569-44616614)
chr8 (2-47)||(5963252-5963297)


Alignment Details
Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 30064748 - 30064936
Alignment:
Q  1 tacagcaacaagatatcctatttaatgtaaaaatacatatattatctttatatnnnnnnnttgatgaagttttaatcaaataattaattgagttgattaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||| |||||||||||||||||||||||||||||||||    
T  30064748 tacagcaacaagatatcctatttaatgtaaaaatacatatattatctttatataaaaaaattgatggagttttaatcaaataattaattgagttgattaa 30064847  T
Q  101 cannnnnnncttaagcattatttcaagatagtgttcttaagcattcgcttgaaattcaattcccattaaaatatgtatcaatcaaacac 189  Q
    ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30064848 catttttttcttaagcattatttcaagatagtgttcttaagcattcgcttgaaattcaattcccattaaaatatgtatcaatcaaacac 30064936  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 30064992 - 30065037
Alignment:
Q  245 catctctaaaactgttttcaaaaacaggattaccaaacaagatttt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30064992 catctctaaaactgttttcaaaaacaggattaccaaacaagatttt 30065037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 3685591 - 3685403
Alignment:
Q  1 tacagcaacaagatatcctatttaatgtaaaaatacatatattatctttatatnnnnnnnttgatgaagttttaatcaaataattaattgagttgattaa 100  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||       |||||| |||||||||||||||||||||||| ||||||||    
T  3685591 tacatcaacaagatatcctatttaatgtaaaaatacatatattatctttatatgaaaaaattgatggagttttaatcaaataattaattgaattgattaa 3685492  T
Q  101 cannnnnnncttaagcattatttcaagatagtgttcttaagcattcgcttgaaattcaattcccattaaaatatgtatcaatcaaacac 189  Q
    ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3685491 catttttttcttaagcattatttcaagatagtgttcttaagcattcgcttgaaattcaattcccattaaaatatgtatcaatcaaacac 3685403  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 3685345 - 3685300
Alignment:
Q  245 catctctaaaactgttttcaaaaacaggattaccaaacaagatttt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  3685345 catctctaaaactgttttcaaaaacaggattaccaaacaagatttt 3685300  T

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Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 32023893 - 32024082
Alignment:
Q  1 tacagcaacaagatatcctatttaatgtaaaaatacatatattatctttatatnnnnnnn-ttgatgaagttttaatcaaataattaattgagttgatta 99  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||        |||||| |||||||||||||||||||||||| |||||||    
T  32023893 tacatcaacaagatatcctatttaatgtaaaaatacatatattatctttatatgaaaaaaattgatggagttttaatcaaataattaattgaattgatta 32023992  T
Q  100 acannnnnnncttaagcattatttcaagatagtgttcttaagcattcgcttgaaattcaattcccattaaaatatgtatcaatcaaacac 189  Q
    |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32023993 acatttttttcttaagcattatttcaagatagtgttcttaagcattcgcttgaaattcaattcccattaaaatatgtatcaatcaaacac 32024082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 51143136 - 51142953
Alignment:
Q  6 caacaagatatcctatttaatgtaaaaatacatatattatctttatatnnnnnnnttgatgaagttttaatcaaataattaattgagttgattaacannn 105  Q
    ||||||||||||||  || |||||||||||||||||||||||||||||       |||||| |||||| ||||||||||||||||| ||||| ||||       
T  51143136 caacaagatatccttgttgatgtaaaaatacatatattatctttatataaaaaatttgatggagttttgatcaaataattaattgaattgatcaacattt 51143037  T
Q  106 nnnncttaagcattatttcaagatagtgttcttaagcattcgcttgaaattcaattcccattaaaatatgtatcaatcaaacac 189  Q
        |||||||||| ||||||||||||||| |||||||||| |||||| ||||||||||| | ||||||||||||| |||||||    
T  51143036 ttttcttaagcattgtttcaagatagtgttattaagcattcacttgaatttcaattcccactgaaatatgtatcaaccaaacac 51142953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 48447951 - 48448079
Alignment:
Q  61 ttgatgaagttttaatcaaataattaattgagttgattaacannnnnnncttaagcattatttcaagatagtgttcttaagcattcgcttgaaattcaat 160  Q
    |||||| |||||| ||||||||||||||||| ||||| ||||       |||||||||| ||||||||||||||| |||||||||| |||||| || |||    
T  48447951 ttgatggagttttgatcaaataattaattgaattgatcaacatttttttcttaagcattgtttcaagatagtgttattaagcattcacttgaattttaat 48448050  T
Q  161 tcccattaaaatatgtatcaatcaaacac 189  Q
    ||||| | ||||||||||||| |||||||    
T  48448051 tcccactgaaatatgtatcaaccaaacac 48448079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 32024139 - 32024184
Alignment:
Q  245 catctctaaaactgttttcaaaaacaggattaccaaacaagatttt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32024139 catctctaaaactgttttcaaaaacaggattaccaaacaagatttt 32024184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 48448148 - 48448193
Alignment:
Q  245 catctctaaaactgttttcaaaaacaggattaccaaacaagatttt 290  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  48448148 catctctaaaactgttttaaaaaacaggattaccaaacaagatttt 48448193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 51142884 - 51142839
Alignment:
Q  245 catctctaaaactgttttcaaaaacaggattaccaaacaagatttt 290  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  51142884 catctctaaaactgtttttaaaaacaggattaccaaacaagatttt 51142839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 44616326 - 44616509
Alignment:
Q  5 gcaacaagatatcctatttaatgtaaaaatacatatattatctttatatnnnnnnnttgatgaagttttaatcaaataattaattgagttgattaacann 104  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||       |||||| |||||||||||||||||||||||| |||| |||||      
T  44616326 gcaacaagatatcctatttaatgtaaaaatacatatattat-tttatataaaaaaattgatggagttttaatcaaataattaattgaattgaataacatt 44616424  T
Q  105 nnnnncttaagcattatttcaagatagtgttcttaagcattcgcttgaaattcaattcccattaaaatatgtatcaatcaaacac 189  Q
         |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44616425 tttttcttaggcattatttcaagatagtgttcttaagcattcgcttgaaattcaattcccattaaaatatgtatcaatcaaacac 44616509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 5963371 - 5963416
Alignment:
Q  245 catctctaaaactgttttcaaaaacaggattaccaaacaagatttt 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5963371 catctctaaaactgttttcaaaaacaggattaccaaacaagatttt 5963416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 44616569 - 44616614
Alignment:
Q  245 catctctaaaactgttttcaaaaacaggattaccaaacaagatttt 290  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  44616569 catctctaaaactgttttcaaaaacaggattaccaaacaaaatttt 44616614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 5963252 - 5963297
Alignment:
Q  2 acagcaacaagatatcctatttaatgtaaaaatacatatattatct 47  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||    
T  5963252 acagcaacaagatatcctatttaatgtaaaaatgcatatataatct 5963297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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