View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14855_high_14 (Length: 298)

Name: NF14855_high_14
Description: NF14855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14855_high_14
NF14855_high_14
[»] chr6 (1 HSPs)
chr6 (9-298)||(34867568-34867857)


Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 298
Target Start/End: Original strand, 34867568 - 34867857
Alignment:
Q  9 aatatatggcatgagattttaaggatcatttcggtgttatctgagtgaaaacaatatacaacctcaaaaatcaagctcaatactgaaacatggcagatta 108  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34867568 aatatgtggcatgagattttaaggatcatttcggtgttatctgagtgaaaacaatatacaaactcaaaaatcaagctcaatactgaaacatggcagatta 34867667  T
Q  109 acagggtgattttactgattctatcctcgattcagttttacacagaattccccaaaatcattttagatacaggactcagatttggtttcaaatttgccaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34867668 acagggtgattttactgattctatcctcgattcagttttacgcagaattccccaaaatcattttagatacaggacttagatttggtttcaaatttgccaa 34867767  T
Q  209 atccaaacctgattcttgtcttattaaccttgacaaaccataacaccactctctacacataaatgctatgtagcaccgacacgtatttgt 298  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34867768 atccaaacttgattcttgtcttatcaaccttgacaaaccataacaccactctctacacataaatgctatgtagcaccgacacgtatttgt 34867857  T

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