View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14855_high_5 (Length: 480)
Name: NF14855_high_5
Description: NF14855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14855_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 211 - 344
Target Start/End: Original strand, 33356468 - 33356602
Alignment:
| Q |
211 |
atttgaagaatagtgggaaaaattgcaaatcagtagagacatctagaatcaaacatcattcaacggatgaacaaacgaatgcctagacttaagagcagtg |
310 |
Q |
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| T |
33356468 |
atttgaagaatagtgagaaaaattgcaaatcagtagagacatctagaatcaaacatccttcaacggatgaacaaaagaatgcctagacttaagagcagtg |
33356567 |
T |
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| Q |
311 |
attctgcagg-aaaaaacacaaattagcaatatag |
344 |
Q |
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| T |
33356568 |
attctgcaggaaaaaaacacaaattagcaatatag |
33356602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 33356242 - 33356364
Alignment:
| Q |
12 |
atcaatatttatagccacttcttagtaaatgattagtcatttgccaaaataccatataatttaagtaaactaatctttcatgaaaattaaaggacataat |
111 |
Q |
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| T |
33356242 |
atcaatatttacagccagttcttagtaaatgat-agtcatttgccaaaataccatagaacttaagtaaactaatctttcatgaaaagtaaaggacataat |
33356340 |
T |
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| Q |
112 |
aagacatcattggattttgggatc |
135 |
Q |
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| T |
33356341 |
aagacatcattgggttttgggatc |
33356364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 408 - 465
Target Start/End: Original strand, 33356666 - 33356724
Alignment:
| Q |
408 |
tgaaggcaccataaagcaacttaaa-ggagaataccaaaagacatcaacaagtagattc |
465 |
Q |
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| T |
33356666 |
tgaaggcaccataaagcaacttaaaaggagaataccaaaagacatcagcaagtagattc |
33356724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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