View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14855_high_6 (Length: 448)
Name: NF14855_high_6
Description: NF14855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14855_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 31994964 - 31995398
Alignment:
| Q |
1 |
ccatacgatttgaggattgcacatcggaaaagaccattgtgaaatatatgacggatggaatgttgttgagggaatttcttgctcagacagagctggacag |
100 |
Q |
| |
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||||||| ||||||||||||||||| || || |||||||| || |||||||||||||||||| ||||||||||||| ||| ||||| | ||||||||||| |
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| T |
31994964 |
ccatacgctttgaggattgcacatccgagaaaaccattgttaagtatatgacggatggaatgctgttgagggaattccttactcagcctgagctggacag |
31995063 |
T |
|
| Q |
101 |
ttatagtgttgtaatggtagacgaggctcatgaaagaacactttcaactgatattttgtttggattagttaaggatgttgctcgtgcccggcctgatctt |
200 |
Q |
| |
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|||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31995064 |
ttatagtgttgtgatggtggatgaagctcatgaaagaacactttcaactgatattttgtttggattagttaaggatgttgctcgtgcccggcctgatctt |
31995163 |
T |
|
| Q |
201 |
aagttgctgatatcaagcgccactcttgatgcagagaagttcagtaactactttgatcttgctccaatattcaaaattcctgggagacggtatcctgttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31995164 |
aagttgctgatatcaagcgccactcttgatgcagagaagttcagtaactactttgatcttgctccaatattcaaaattcctgggagacggtatcctgttg |
31995263 |
T |
|
| Q |
301 |
aaatacactactccaaaacagcagtatctaactacatggatgctgctattgtcacaacgcttcaaatccatgccactcaacctcctggagatatattggt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31995264 |
aaatacactactccaaaacagcagtatctaactacatggatgctgctattgtcacaacgcttcaaatccatgccactcaacctcctggagatatattggt |
31995363 |
T |
|
| Q |
401 |
attccttgctggtcaagaagaaattgaaagcgtag |
435 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
31995364 |
attccttgctggtcaagaagaaattgaaagcgtag |
31995398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 15841424 - 15841848
Alignment:
| Q |
1 |
ccatacgatttgaggattgcacatcggaaaagaccattgtgaaatatatgacggatggaatgttgttgagggaatttcttgctcagacagagctggacag |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
15841424 |
ccatacgatttgaggattgcacgtcggaaaagaccat----------atgacggatggaatgttgttgagggaatttcttgctcagcctgagctggacag |
15841513 |
T |
|
| Q |
101 |
ttatagtgttgtaatggtagacgaggctcatgaaagaacactttcaactgatattttgtttggattagttaaggatgttgctcgtgcccggcctgatctt |
200 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
15841514 |
ttatagtgttataatggtagacgaggctcatgaaagaacactttcaactgatattttgtttggattggttaaggatgttgctcgtacccggcctgatctt |
15841613 |
T |
|
| Q |
201 |
aagttgctgatatcaagcgccactcttgatgcagagaagttcagtaactactttgatcttgctccaatattcaaaattcctgggagacggtatcctgttg |
300 |
Q |
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||||||||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15841614 |
aagttgctgatatcaagtgctactcttgatgcaaagaagtttagtaactactttgatcttgctccaatattcaaaattcctgggagacggtatccagttg |
15841713 |
T |
|
| Q |
301 |
aaatacactactccaaaacagcagtatctaactacatggatgctgctattgtcacaacgcttcaaatccatgccactcaacctcctggagatatattggt |
400 |
Q |
| |
|
||||||||| | | ||| || ||| | || ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| |
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| T |
15841714 |
aaatacacttcacaaaagcaccagaagctgactacttggatgctgctattgtcacaacgcttcaaatccatgccactcaatctcccagagaaatattggt |
15841813 |
T |
|
| Q |
401 |
attccttgctggtcaagaagaaattgaaagcgtag |
435 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| |
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|
| T |
15841814 |
attccttagtggtcaagaagaaattgaaaccgtag |
15841848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 24009416 - 24009844
Alignment:
| Q |
1 |
ccatacgatttgaggattgcacatcggaaaagaccattgtgaaatatatgacggatggaatgttgttgagggaatttcttgctcagacagagctggacag |
100 |
Q |
| |
|
||||||| |||||||||||||| || | ||||||||||| |||||||||||||||||||||||||||||||| || |||||||| | ||||||||||| |
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| T |
24009416 |
ccatacgctttgaggattgcacgtccaagaagaccattgttaaatatatgacggatggaatgttgttgagggagttccttgctcaacctgagctggacag |
24009515 |
T |
|
| Q |
101 |
ttatagtgttgtaatggtagacgaggctcatgaaagaacactttcaactgatattttgtttggattagttaaggatgttgctcgtgcccggcctgatctt |
200 |
Q |
| |
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|||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
24009516 |
ttatagtgttgtgatggtggatgaggctcatgaaagaacactttcaactgatattttgtttggattacttaaggatgttgctcgtgcccggcctgatctt |
24009615 |
T |
|
| Q |
201 |
aagttgctgatatcaagcgccactcttgatgcagagaagttcagtaactactttgatcttgctccaatattcaaaattcctgggagacggtatcctgttg |
300 |
Q |
| |
|
|||||| ||||||| || || |||||||||||||||||||||| ||||| |||||||| ||||| || |||| ||||||||||||||| |||||||||| |
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| T |
24009616 |
aagttgttgatatctagtgctactcttgatgcagagaagttcattaacttctttgatcatgctcaaaaattcgaaattcctgggagaccatatcctgttg |
24009715 |
T |
|
| Q |
301 |
aaatacactactccaaaacagcagtatctaactacatggatgctgctattgtcacaacgcttcaaatccatgccactcaacctcctggagatatattggt |
400 |
Q |
| |
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||||||||| | | ||| ||||| | | |||||| | |||||||||||||| || |||||||| |||||| ||||||||||||| |||||||||||| | |
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| T |
24009716 |
aaatacacttcacggaaaaagcagaagccaactactttgatgctgctattgttacgacgcttcagatccataccactcaacctcccggagatatattgct |
24009815 |
T |
|
| Q |
401 |
attccttgctggtcaagaagaaattgaaa |
429 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
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| T |
24009816 |
attccttactggtcaagaagaaattgaaa |
24009844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 192 - 429
Target Start/End: Original strand, 7287400 - 7287637
Alignment:
| Q |
192 |
cctgatcttaagttgctgatatcaagcgccactcttgatgcagagaagttcagtaactactttgatcttgctccaatattcaaaattcctgggagacggt |
291 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||||||| ||||||||| | ||||| ||| |||||| |||||||||||||| |||||| ||| |
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|
| T |
7287400 |
cctgatcttaagttgctgatatcaagtgctacacttgatgcagaaaagttcagtgattacttcgattctgctccgatattcaaaattccagggagaaggt |
7287499 |
T |
|
| Q |
292 |
atcctgttgaaatacactactccaaaacagcagtatctaactacatggatgctgctattgtcacaacgcttcaaatccatgccactcaacctcctggaga |
391 |
Q |
| |
|
|||| ||||||||||||| ||||| || ||| | || ||||| | ||||| |||||||| ||| | ||||||||||||| ||||||||||||||||| |
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|
| T |
7287500 |
atccagttgaaatacactttaccaaagcaccagaagctgactacttagatgcagctattgtaacagcacttcaaatccatgttactcaacctcctggaga |
7287599 |
T |
|
| Q |
392 |
tatattggtattccttgctggtcaagaagaaattgaaa |
429 |
Q |
| |
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|||||| |||||||| |||||||||||||||| |||| |
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| T |
7287600 |
tatattaatattccttactggtcaagaagaaatcgaaa |
7287637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 7286799 - 7286871
Alignment:
| Q |
9 |
tttgaggattgcacatcggaaaagaccattgtgaaatatatgacggatggaatgttgttgagggaatttcttg |
81 |
Q |
| |
|
||||||||||||||||| || ||||| ||| ||||||||||||| ||||||||||| ||||||||||||||| |
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|
| T |
7286799 |
tttgaggattgcacatcagacaagactattctgaaatatatgacagatggaatgttactgagggaatttcttg |
7286871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 7286975 - 7287045
Alignment:
| Q |
104 |
tagtgttgtaatggtagacgaggctcatgaaagaacactttcaactgatattttgtttggattagttaagg |
174 |
Q |
| |
|
||||||||| ||||| || |||||||||||||| ||||| ||||||||||| ||||||| |||||| |||| |
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|
| T |
7286975 |
tagtgttgtgatggtggatgaggctcatgaaaggacactctcaactgatatcttgtttgcattagtgaagg |
7287045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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