View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14855_high_7 (Length: 446)
Name: NF14855_high_7
Description: NF14855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14855_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Complemental strand, 16963218 - 16962807
Alignment:
| Q |
17 |
tattaaaaatagtggcattaatgctcaaatccgataggattgaaactttgtatcacaaagtgaagctctaaccattggaaatataaattttcacttcatt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16963218 |
tattaaaaatagtggcattaatgctcaaatccgataggattgaaactttgtattacaaagtgaagctctaaccattgaaaatataaattttcacttcatt |
16963119 |
T |
|
| Q |
117 |
tatcatttcttaaaataagtgttactgttactattttcaatctaacaataattatttattttccaaattaatattatgttaatgactctcaagttcatta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16963118 |
tatcatttcttaaaataagtgttactgttactattttcaatctaacaataattatgtattttccaaattaatattatgttaatgactctcaagttcatta |
16963019 |
T |
|
| Q |
217 |
cattttatgtgtttacttacaatggttaatgtctacaaagcaat-ttttccataggatatatatattcaaagcaattttttcttaaaatagataaattaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16963018 |
cattttatgtgtttacttacaatggttaatgtctacaaagcaattttttccatagtatatatatattcaaagcaattttttcttaaaatagataaattaa |
16962919 |
T |
|
| Q |
316 |
atttaatcatgaagaaggaccacactattgggtgtctaaaggagacaagacaagaggggaaaaacaatccaaatttctgtgagtgagatacacaac-aaa |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
16962918 |
atttaatcatgaagaaggaccacactattgggtgtctaaaggagacaagacaagaggggaaaaacaatccaaatttcagtgagtgagatacacaacaaaa |
16962819 |
T |
|
| Q |
415 |
aagtagaccatt |
426 |
Q |
| |
|
|||||||||||| |
|
|
| T |
16962818 |
aagtagaccatt |
16962807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University