View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14855_high_8 (Length: 416)
Name: NF14855_high_8
Description: NF14855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14855_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 51844214 - 51844413
Alignment:
| Q |
16 |
atgaaggtagccggtcaacgaatagaagatgttaaaaatagcnnnnnnntctgaatgaattcaatccaattgtaaatttaactataattagaattaaaat |
115 |
Q |
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| T |
51844214 |
atgaaggtagccggtcaacgaatagaagatgttaaaaatagcaaaaaaatctgaatgaattgaatccaattgtaaatttaactataattagaattaaaat |
51844313 |
T |
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| Q |
116 |
ccaatattggtaattctaaaagttgaagcctccatcaccaatctgttctcacacacgatgacaactttcatgtttccgtttgtggctacccaattccaag |
215 |
Q |
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| T |
51844314 |
ccaatattggtaattctaaaagttgaagcctccatcaccaatctgttctcacacacgatgacaactttcatgtttccgtttgtggctacccaattccaag |
51844413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 308 - 398
Target Start/End: Original strand, 51844506 - 51844596
Alignment:
| Q |
308 |
ctctatctctccgaacagcggtccatttctacaaacaaccggaggacgtttcagattcccggttgccaatggccgctgttcgttttattct |
398 |
Q |
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| T |
51844506 |
ctctatctctccgaacagcggtccatttctacaaacaaccggaggacgtttcagattcccggttgccaatggccgctgttcgttttattct |
51844596 |
T |
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