View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14855_low_12 (Length: 400)
Name: NF14855_low_12
Description: NF14855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14855_low_12 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 42087357 - 42087739
Alignment:
| Q |
18 |
ataattgcaagaaccaaagtaccaacttacctctgattgcaaagactctttctcttccttaaggcactgaaacttagaagctaaattatcataatcatct |
117 |
Q |
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| T |
42087357 |
ataattgcaagaaccaaagtactaacttacctctgattgcaaagactctttctcttccttaaggcactgaaacttagaagctaaattatcatattcatct |
42087456 |
T |
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| Q |
118 |
ttgagttttctgtattcttgttctatcctttttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctc |
217 |
Q |
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| T |
42087457 |
ttgagttttctgtattcttgttctatcctttttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctc |
42087556 |
T |
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| Q |
218 |
ttgcaagttgcatcttcttccttggttccaactttgattctgactcaaatatgcattctagtgatcttatctgttcatcactaaaccttctcttgttttc |
317 |
Q |
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| T |
42087557 |
ttgcaagttgcatcttcttccttggttccaactttgattctgactcaaatatgcattctagtgatcttatctgttcatcactaaaccttctcttgttttc |
42087656 |
T |
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| Q |
318 |
tatcttcttgtttttcttctttgaattctgaggtgtctccaagcaactcatgctttcaacattttttcctttaaacccttcat |
400 |
Q |
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| T |
42087657 |
tatcttcttgtttttcttctttgaattctgaggtgtctctaagcaactcatgctttcaacattttttcctttaaacccttcat |
42087739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 39342750 - 39342692
Alignment:
| Q |
154 |
ttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaag |
212 |
Q |
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| T |
39342750 |
ttccatcttgctctcctgttttggaaccaaacagctacttgtctaggctgcaacccaag |
39342692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 9379118 - 9379021
Alignment:
| Q |
148 |
tttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttgcatcttcttccttggttc |
245 |
Q |
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| T |
9379118 |
tttgatttccatctagctcttttgttttgaaaccatatagcaacttgtcttggctgcaatccaagctctctagctaactgcaacttctttcttggttc |
9379021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 24692391 - 24692455
Alignment:
| Q |
166 |
cttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttgcat |
230 |
Q |
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| T |
24692391 |
cttctgttttgaaaccatatagcaatttgtcttggctgcaatccaagagctcttgctagctgcat |
24692455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 16762999 - 16763066
Alignment:
| Q |
160 |
cttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttg |
227 |
Q |
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| T |
16762999 |
cttgcccttctgttttgaaaccatatagcaacttgtcttggttgcaaaccaagctcttttgcaagttg |
16763066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 17181907 - 17181983
Alignment:
| Q |
154 |
ttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaaaccaagatctcttgcaagttgcat |
230 |
Q |
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| T |
17181907 |
ttccatcttgcccttctattttgaaaccatatagcaacttgtctaggttgcaagttaagagctcttgcaagctgcat |
17181983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 2342778 - 2342836
Alignment:
| Q |
148 |
tttgatttccatcttgctcttctgttctgaaaccatatagcaacttgtctaggctgcaa |
206 |
Q |
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| T |
2342778 |
tttgttttgcatcttgctcttctattctgaaaccatatagcaatttgtctaggctgcaa |
2342836 |
T |
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