View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14855_low_13 (Length: 375)

Name: NF14855_low_13
Description: NF14855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14855_low_13
NF14855_low_13
[»] chr6 (5 HSPs)
chr6 (1-358)||(17361942-17362299)
chr6 (3-208)||(17368233-17368438)
chr6 (141-208)||(19119068-19119135)
chr6 (141-208)||(19126362-19126429)
chr6 (309-354)||(17368554-17368599)
[»] chr3 (10 HSPs)
chr3 (3-120)||(23231049-23231166)
chr3 (7-200)||(23234853-23235045)
chr3 (141-203)||(23197017-23197079)
chr3 (3-111)||(23239573-23239681)
chr3 (315-357)||(771320-771362)
chr3 (315-357)||(2456434-2456476)
chr3 (141-202)||(7398164-7398225)
chr3 (130-198)||(768318-768386)
chr3 (297-333)||(23226213-23226249)
chr3 (297-333)||(23230836-23230872)
[»] chr2 (2 HSPs)
chr2 (136-205)||(7156174-7156243)
chr2 (130-208)||(33038154-33038232)


Alignment Details
Target: chr6 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 17361942 - 17362299
Alignment:
Q  1 gattcttttgatttggtgaccgagtcgtataaaagacttttgcagcctaactatggagtggaagatgtgtataaagtgatcttgggtgtgtcaagaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17361942 gattcttttgatttggtgaccgagtcgtataaaagacttttgcagcctaactatggagtggaagatgtgtataaagtgatcttgggtgtctcaagaaatt 17362041  T
Q  101 gtttgtgtatctttgcatgtnnnnnnncattttttgatgcttggctgatgaaggagtacggaaacgaagggtcttggactaaattatttcgtgttcctta 200  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17362042 gtttgtgtatctttgcatgtaaaaaaacattttttgatgcttggctgatgaaggagtacggaaacgaagggtcttggactaaattatttcgtgttcctta 17362141  T
Q  201 catggaagtcaatcctttcactaatgcaaaaaccacctacccattatggatttccgaggaagaccaagttctaatggaatatacatacggaggatgtttg 300  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17362142 catggaagtcgatcctttcactaatgcaaaaaccacctacccattatggatttccgaggaagaccaagttctaatggaatatacatacggaggatgtttg 17362241  T
Q  301 gccgtttgtgatttcaaaaatggtacttttaagtttccaaagattcaaaacatcgatg 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17362242 gccgtttgtgatttcaaaaatggtacttttaagtttccaaagattcaaaacatcgatg 17362299  T

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Target: chr6; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 17368233 - 17368438
Alignment:
Q  3 ttcttttgatttggtgaccgagtcgtataaaagacttttgcagcctaactatggagtggaagatgtgtataaagtgatcttgggtgtgtcaagaaattgt 102  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||  |||||||||  ||| ||||| ||| || ||  |||||    
T  17368233 ttcttttgatttggtgactgagtcgtataaaagacttttgcagcctaactatggagcggaatttgtgtataatttgaacttggatgtctcgagggattgt 17368332  T
Q  103 ttgtgtatctttgcatgtnnnnnnncattttttgatgcttggctgatgaaggagtacggaaacgaagggtcttggactaaattatttcgtgttccttaca 202  Q
    ||| ||||||||||  ||         |||||||||| |||||||||||| ||||| ||||| |||||||||||||||||||| |||| ||||||||||     
T  17368333 ttgcgtatctttgctagtagacaaaggttttttgatgtttggctgatgaaagagtatggaaatgaagggtcttggactaaattgtttcatgttccttact 17368432  T
Q  203 tggaag 208  Q
    ||||||    
T  17368433 tggaag 17368438  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 19119068 - 19119135
Alignment:
Q  141 ttggctgatgaaggagtacggaaacgaagggtcttggactaaattatttcgtgttccttacatggaag 208  Q
    |||| |||||||||| || ||||| |||| ||||||||||||||| |||| |||||||||||||||||    
T  19119068 ttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatggaag 19119135  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 19126362 - 19126429
Alignment:
Q  141 ttggctgatgaaggagtacggaaacgaagggtcttggactaaattatttcgtgttccttacatggaag 208  Q
    |||| |||||||||| || ||||| |||| ||||||||||||||| |||| |||||||||||||||||    
T  19126362 ttggttgatgaaggaatatggaaatgaagagtcttggactaaattgtttcatgttccttacatggaag 19126429  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 354
Target Start/End: Original strand, 17368554 - 17368599
Alignment:
Q  309 tgatttcaaaaatggtacttttaagtttccaaagattcaaaacatc 354  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||    
T  17368554 tgatttaaaaaatggtacttttaagtttccaaagattcataacatc 17368599  T

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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 23231166 - 23231049
Alignment:
Q  3 ttcttttgatttggtgaccgagtcgtataaaagacttttgcagcctaactatggagtggaagatgtgtataaagtgatcttgggtgtgtcaagaaattgt 102  Q
    |||||||||||||||||  |||| ||||| |||||||||||||||||| ||||||| |||| ||||| |||| |||| ||||||||| |  ||  |||||    
T  23231166 ttcttttgatttggtgattgagtagtatagaagacttttgcagcctaattatggaggggaatatgtgcataaggtgaacttgggtgttttgagggattgt 23231067  T
Q  103 ttgtgtatctttgcatgt 120  Q
    ||||||||| ||||||||    
T  23231066 ttgtgtatccttgcatgt 23231049  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 23235045 - 23234853
Alignment:
Q  7 tttgatttggtgaccgagtcgtataaaagacttttgcagcctaactatggagtggaagatgtgtataaagtgatcttgggtgtgtcaagaaattgtttgt 106  Q
    |||||||||||||  |||||||||| ||||||||||| |||||| ||||||| |||| || || |||| ||||  |||||||| |||||    |||||||    
T  23235045 tttgatttggtgattgagtcgtatagaagacttttgctgcctaattatggaggggaatatttggataaggtgaatttgggtgtttcaaggggctgtttgt 23234946  T
Q  107 gtatctttgcatgtnnnnnnncattttttgatgcttggctgatgaaggagtacggaaacgaagggtcttggactaaattatttcgtgttcctta 200  Q
    ||| | ||||||||         |||| |  || |||||||||||| || || ||||||| || ||||||||||||||| ||||||||||||||    
T  23234945 gta-cattgcatgtagtcccggtttttctagtgtttggctgatgaaagaatatggaaacgtagagtcttggactaaattgtttcgtgttcctta 23234853  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 23197017 - 23197079
Alignment:
Q  141 ttggctgatgaaggagtacggaaacgaagggtcttggactaaattatttcgtgttccttacat 203  Q
    ||||||||||||||| || ||||| ||||  |||||||||||||| |||||| ||||||||||    
T  23197017 ttggctgatgaaggaatatggaaatgaagaatcttggactaaattgtttcgtattccttacat 23197079  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 23239681 - 23239573
Alignment:
Q  3 ttcttttgatttggtgaccgagtcgtataaaagacttttgcagcctaactatggagtggaagatgtgtataaagtgatcttgggtgtgtcaagaaattgt 102  Q
    |||||||||||||||||  |||| ||||| || ||||||||||||||| ||||||| |||  ||||| |||  |||  ||||||||| |  ||  |||||    
T  23239681 ttcttttgatttggtgattgagtagtatagaacacttttgcagcctaattatggaggggagtatgtgcatagtgtggacttgggtgtcttgagggattgt 23239582  T
Q  103 ttgtgtatc 111  Q
    |||||||||    
T  23239581 ttgtgtatc 23239573  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 357
Target Start/End: Complemental strand, 771362 - 771320
Alignment:
Q  315 caaaaatggtacttttaagtttccaaagattcaaaacatcgat 357  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||    
T  771362 caaaagtggtactttgaagtttcctaagattcaaaacatcgat 771320  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 315 - 357
Target Start/End: Original strand, 2456434 - 2456476
Alignment:
Q  315 caaaaatggtacttttaagtttccaaagattcaaaacatcgat 357  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||    
T  2456434 caaaagtggtactttgaagtttcctaagattcaaaacatcgat 2456476  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 7398225 - 7398164
Alignment:
Q  141 ttggctgatgaaggagtacggaaacgaagggtcttggactaaattatttcgtgttccttaca 202  Q
    |||| ||||||||||||| ||||| |||| |||||||| |||||| ||| ||||| ||||||    
T  7398225 ttggttgatgaaggagtatggaaatgaagagtcttggattaaattgttttgtgtttcttaca 7398164  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 768386 - 768318
Alignment:
Q  130 ttttttgatgcttggctgatgaaggagtacggaaacgaagggtcttggactaaattatttcgtgttcct 198  Q
    |||||| ||| |||| | ||||| ||||||||||| |||| ||||||||||||||| || | |||||||    
T  768386 ttttttaatgtttggattatgaatgagtacggaaatgaagagtcttggactaaattgttccatgttcct 768318  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 23226249 - 23226213
Alignment:
Q  297 tttggccgtttgtgatttcaaaaatggtacttttaag 333  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  23226249 tttggccgtttatgatttcaaaaatggtactcttaag 23226213  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 23230872 - 23230836
Alignment:
Q  297 tttggccgtttgtgatttcaaaaatggtacttttaag 333  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  23230872 tttggccgtttatgacttcaaaaatggtacttttaag 23230836  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 7156243 - 7156174
Alignment:
Q  136 gatgcttggctgatgaaggagtacggaaacgaagggtcttggactaaattatttcgtgttccttacatgg 205  Q
    |||| |||||| ||||||||||| ||||| ||||  |||||| ||||||| || ||||||||||||||||    
T  7156243 gatgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttccgtgttccttacatgg 7156174  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 208
Target Start/End: Original strand, 33038154 - 33038232
Alignment:
Q  130 ttttttgatgcttggctgatgaaggagtacggaaacgaagggtcttggactaaattatttcgtgttccttacatggaag 208  Q
    |||||||||| |||| | |||||||| || |||||| ||  ||||||||||| ||| |  |||||||||||||||||||    
T  33038154 ttttttgatgtttggattatgaaggaatatggaaacaaaaagtcttggactagattgtaccgtgttccttacatggaag 33038232  T

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