View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14855_low_16 (Length: 312)
Name: NF14855_low_16
Description: NF14855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14855_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 30274739 - 30274437
Alignment:
| Q |
1 |
ctctgattagtcaagtggctgttaatttggaaattagagaaaaatggtcgttattctgttagaagtgtgtatcggctgtgtatggcagtcattgcg-ata |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30274739 |
ctctgattagtcaagtggctgttaatttggaaattagagaaaaatggtcgttattctgttagaagtgtgtatcggctgtgtatggcagtcattgcggata |
30274640 |
T |
|
| Q |
100 |
attcatttttacattgccccggtaattgggctagtatttggagattgaaggtccctctgaaagtgaaaaatttgttatggcgaatttgtcttgtcgcgga |
199 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30274639 |
attcattttcacatcgccctggtaattgggctagtatttggagattgaaggtccctccgaaagtgaaaaatttgttatggcgaatttgtcttgtcgcgga |
30274540 |
T |
|
| Q |
200 |
tgtttgccgacgcatgcaaggctgttggac-----ggtgaattgcccttctacgtgtgctatgtgtgaggagagttacgaggatgcgactcgtgtgttat |
294 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30274539 |
tgtttgccgacgcgtgcaaggctgttggacaagggggtgaattgcccttctacgtgtgctatgtgtgaggagagttacgaggatgcgactcgtgtgttat |
30274440 |
T |
|
| Q |
295 |
ttg |
297 |
Q |
| |
|
||| |
|
|
| T |
30274439 |
ttg |
30274437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 14151376 - 14151209
Alignment:
| Q |
22 |
ttaatttggaaattagagaaaaatggtcgttattctgttagaagtgtgtatcggctgtgtatggcagtcattgcg-ataattcatttttacattgccccg |
120 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| |||||||| | ||||| | || ||||| ||| |||||| ||||||||||||| ||| | || | |
|
|
| T |
14151376 |
ttaatttggaaattagaaaaaaatggttgttattcggttagaagggcatatcgaccgtatatggaagttattgcggataattcatttttgcatcgtcctg |
14151277 |
T |
|
| Q |
121 |
gtaattgggctagtatttggagattgaaggtccctctgaaagtgaaaaatttgttatggcgaatttgt |
188 |
Q |
| |
|
|||||||| ||||||| |||| ||||||||||||| |||||||||| || |||| ||| |||||||| |
|
|
| T |
14151276 |
gtaattggtctagtatctggaatttgaaggtccctccgaaagtgaaagatctgttgtggagaatttgt |
14151209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 32794857 - 32795007
Alignment:
| Q |
21 |
gttaatttggaaattagagaaaaatggtcgttattctgttagaagtgtgtatcggctgtgtatggcagtcattgcg-ataattcatttttacattgcccc |
119 |
Q |
| |
|
|||||| | ||| |||||||||||||||| |||||||||||||||||||||||| |||||||||| ||| || || ||||||||||| |||| | ||| |
|
|
| T |
32794857 |
gttaatatagaatttagagaaaaatggtcattattctgttagaagtgtgtatcgactgtgtatggaagttatcacgaataattcatttctacaccgtccc |
32794956 |
T |
|
| Q |
120 |
ggtaattgggctagtatttggagattgaaggtccctctgaaagtgaaaaat |
170 |
Q |
| |
|
||||||||| |||||||||| | ||| ||||| ||| |||||||| |||| |
|
|
| T |
32794957 |
ggtaattggtctagtatttgaaaattaaaggttccttcgaaagtgagaaat |
32795007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University