View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14855_low_19 (Length: 269)

Name: NF14855_low_19
Description: NF14855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14855_low_19
NF14855_low_19
[»] chr8 (3 HSPs)
chr8 (7-253)||(38902208-38902455)
chr8 (57-103)||(38464022-38464068)
chr8 (51-88)||(6947877-6947914)
[»] chr6 (1 HSPs)
chr6 (57-88)||(27904565-27904596)
[»] chr2 (1 HSPs)
chr2 (52-98)||(8024661-8024707)
[»] chr1 (1 HSPs)
chr1 (57-103)||(37351439-37351485)
[»] chr3 (1 HSPs)
chr3 (51-84)||(40302651-40302684)
[»] chr5 (2 HSPs)
chr5 (52-88)||(12398449-12398485)
chr5 (51-103)||(22648181-22648232)
[»] chr4 (1 HSPs)
chr4 (51-103)||(12710336-12710388)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 253
Target Start/End: Complemental strand, 38902455 - 38902208
Alignment:
Q  7 gatttcattcttctgctattttggggagagactttgacttatggcctcaaattagtcggtccttgggttggataccgagtttaaaataaaataaaaa-tg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  38902455 gatttcattcttctgctattttggggagagactttgacttatggcctcaaattagtcggtccttgggttggataccgagtttaaaataaaaaaaaaaatg 38902356  T
Q  106 tttctaatggagagccttccatttcaaaaccctattctgtgatctgtatgcagttttattttgtgaattgtatctccattggttggtgagaatgtgtgca 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38902355 tttctaatggagagccttccatttcaaaaccctattctgtgatctgtatgcagttttattttgtgaattgtatctccattggttggtgagaatgtgtgca 38902256  T
Q  206 attggttttcaattcctgtggtgtacataccatttggtaggtagcttt 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38902255 attggttttcaattcctgtggtgtacataccatttggtaggtagcttt 38902208  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 38464022 - 38464068
Alignment:
Q  57 attagtcggtccttgggttggataccgagtttaaaataaaataaaaa 103  Q
    ||||||||||||||| |  |||||||||||| |||||||||||||||    
T  38464022 attagtcggtccttgagcaggataccgagttaaaaataaaataaaaa 38464068  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 6947877 - 6947914
Alignment:
Q  51 cctcaaattagtcggtccttgggttggataccgagttt 88  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  6947877 cctcagattagtcggtccttgggttggataacgagttt 6947914  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 88
Target Start/End: Original strand, 27904565 - 27904596
Alignment:
Q  57 attagtcggtccttgggttggataccgagttt 88  Q
    ||||||||||||||||||||||||||||||||    
T  27904565 attagtcggtccttgggttggataccgagttt 27904596  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 8024707 - 8024661
Alignment:
Q  52 ctcaaattagtcggtccttgggttggataccgagtttaaaataaaat 98  Q
    ||||||||||||||||||||| ||||||| ||| ||||||| |||||    
T  8024707 ctcaaattagtcggtccttggattggatatcgattttaaaaaaaaat 8024661  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 37351485 - 37351439
Alignment:
Q  57 attagtcggtccttgggttggataccgagtttaaaataaaataaaaa 103  Q
    |||||||||||||||| | ||||||||||||||||| |||| |||||    
T  37351485 attagtcggtccttggatcggataccgagtttaaaaaaaaaaaaaaa 37351439  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 40302684 - 40302651
Alignment:
Q  51 cctcaaattagtcggtccttgggttggataccga 84  Q
    ||||||||||||||||||||||| ||||||||||    
T  40302684 cctcaaattagtcggtccttgggctggataccga 40302651  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 12398485 - 12398449
Alignment:
Q  52 ctcaaattagtcggtccttgggttggataccgagttt 88  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  12398485 ctcaaattagtcggttcttggattggataccgagttt 12398449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 22648181 - 22648232
Alignment:
Q  51 cctcaaattagtcggtccttgggttggataccgagtttaaaataaaataaaaa 103  Q
    ||||| ||||||||||| |||| | ||||||||||||||||| ||||||||||    
T  22648181 cctcagattagtcggtctttggatcggataccgagtttaaaa-aaaataaaaa 22648232  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 12710336 - 12710388
Alignment:
Q  51 cctcaaattagtcggtccttgggttggataccgagtttaaaataaaataaaaa 103  Q
    ||||| |||| ||||||||||| | ||||||||||||||||| |||| |||||    
T  12710336 cctcagattaatcggtccttggatcggataccgagtttaaaaaaaaaaaaaaa 12710388  T

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