View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14855_low_2 (Length: 628)
Name: NF14855_low_2
Description: NF14855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14855_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 25 - 615
Target Start/End: Original strand, 35783968 - 35784556
Alignment:
| Q |
25 |
ccttatctattctgtccatttccttttgaattctttatttccttgatgaacttgcctgttagagaggttactgagttatagtctcaaattcatcttcctc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35783968 |
ccttatctattctgtccatttccttttgaattctttatttccttgatgaacttgcctgttagagaggttactgagttatagtctcaaattcatcttcctc |
35784067 |
T |
|
| Q |
125 |
tatgatagactttgagctctttactattgaggagttttctcttgaaaatcttcagttcatttcccatcctcctaacaaagtttctaaagctccatctaag |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35784068 |
tatgatagactttgagctctttactattgaggagttttctcttgaaaatcttcagttcatttcccatcctcctaacaaagtttctaaagctccatctgag |
35784167 |
T |
|
| Q |
225 |
ctcaaaccttatgtttgaactgttgttttacataactaacagcaacattgatgacatgttactgaagcatagaatctcattgctgtctcccagaatgtct |
324 |
Q |
| |
|
||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35784168 |
ctcaaaccttatgtttggattattgttttacataactaacagcaacattgatgacatgttactgaagcatagaatctcattgctgtctcacagaatgtct |
35784267 |
T |
|
| Q |
325 |
attatgtaattcttgtccatcaaccagggtttatctcgttttgcattgttttatggctactttttcacagagtaagctgtgcgggatttatggaggatag |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35784268 |
attatgtaattcttgtccatcaaccagggtttatctcgttgtgcattgttttatggctacttttt--cagagtaagctgtgcgggatttatggaggatag |
35784365 |
T |
|
| Q |
425 |
taggtttgtcctacggatatgctttaatttctctcttgatttcggaggatttgttcacatagaaagctaatattttgtggcaaagctctgtctctgcatt |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35784366 |
taggtttgtcctacggatatgctttaatttctctcttgatttcggaggatttgttcacatagaaagctaatattttgtggcaaagctctgtctctgcatt |
35784465 |
T |
|
| Q |
525 |
tcttttttgtatattttgtggcaaagctcgttactattttggagtggaaattgtataatttcaaagggctcttgttttcctctagaattat |
615 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
35784466 |
tcttttttgtatattttgtggcaaagctctttactattttggagtggaaattgtataatttcaaagggctcttgttttgctctagacttat |
35784556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University