View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14855_low_3 (Length: 568)
Name: NF14855_low_3
Description: NF14855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14855_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 304 - 402
Target Start/End: Complemental strand, 13778422 - 13778324
Alignment:
| Q |
304 |
gactaccatttaaaattgtgttgtcttagttaaattacacaacagttttatttgactcctttaaaagtggcgttgcattatagcctaaatgttgtagtg |
402 |
Q |
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| T |
13778422 |
gactaccatttaaaattgtgttgttttagttaaattacacaacagttttatttgactcctttaaaagtggcgttgcattatagcctaaatgttgcagtg |
13778324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 12 - 112
Target Start/End: Complemental strand, 13778765 - 13778665
Alignment:
| Q |
12 |
attatgcagagaagtgattcagtgaagtgcttatgagagagagggaagcgtttgtgttgaagagattttgagacgtgattctgagcagtgcttatgcgag |
111 |
Q |
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| T |
13778765 |
attatgcagagaagtgattcagtgaagtgcttatgagagagaggtaagcgtttgtgttgaagtgattttgagaagtgattttgagaagtgcttatgagag |
13778666 |
T |
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| Q |
112 |
g |
112 |
Q |
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| T |
13778665 |
g |
13778665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 5e-42; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 304 - 403
Target Start/End: Original strand, 7428229 - 7428328
Alignment:
| Q |
304 |
gactaccatttaaaattgtgttgtcttagttaaattacacaacagttttatttgactcctttaaaagtggcgttgcattatagcctaaatgttgtagtga |
403 |
Q |
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| T |
7428229 |
gactaccatttaaaattgtgttgtcttagttaaattacacaaaagttttatttggctcctttaaaagtggcgttccattatagcctaaatgttgtagtga |
7428328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 7427911 - 7428020
Alignment:
| Q |
3 |
tctgaagcgattatgcagagaagtgattcagtgaagtgcttatgagagagagggaagcgtttgtgttgaagagattttgagacgtgattctgagcagtgc |
102 |
Q |
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| T |
7427911 |
tctgaagcgattatgcagagaagtgattcagtgaagtgcttatgagagagaggtaagcgtttgtgttgaagtgattttgaaaagtgattttgagaagtgc |
7428010 |
T |
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| Q |
103 |
ttatgcgagg |
112 |
Q |
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||||| |||| |
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| T |
7428011 |
ttatgagagg |
7428020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 304 - 403
Target Start/End: Original strand, 545838 - 545937
Alignment:
| Q |
304 |
gactaccatttaaaattgtgttgtcttagttaaattacacaacagttttatttgactcctttaaaagtggcgttgcattatagcctaaatgttgtagtga |
403 |
Q |
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|||||||||||||||||||||||| || || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
545838 |
gactaccatttaaaattgtgttgtttttgtcaaattagacaacagttttatttgactcctttaaaagtgacgttgcattatagcctaaatgttgtagtga |
545937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 545572 - 545648
Alignment:
| Q |
20 |
gagaagtgattcagtgaagtgcttatgagagagagggaagcgtttgtgttgaagagattttgagacgtgattctgag |
96 |
Q |
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| T |
545572 |
gagaagtgattcggtgaagtgcttatgagagagaggtaagtgtttgtgttgaattgattctgagaagtgattatgag |
545648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 449 - 553
Target Start/End: Complemental strand, 6799460 - 6799356
Alignment:
| Q |
449 |
tggtttctgatttctaaagttacatcagatatggacagacatatagaacacaatccatagatatttcaatgatcaaaataggggaagagaaacacgtaca |
548 |
Q |
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| T |
6799460 |
tggtttctaatttctaaagttacatcagatttggacagacatatagaacacaatccatagatattttaatgatcaaaatatgggaagagaaacacataca |
6799361 |
T |
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| Q |
549 |
aaaat |
553 |
Q |
| |
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||||| |
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| T |
6799360 |
aaaat |
6799356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 449 - 538
Target Start/End: Complemental strand, 6797576 - 6797489
Alignment:
| Q |
449 |
tggtttctgatttctaaagttacatcagatatggacagacatatagaacacaatccatagatatttcaatgatcaaaataggggaagaga |
538 |
Q |
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||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||| | ||||||||| |
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| T |
6797576 |
tggtttccaatttctaaagttacatcagatatgtaca--catatagaacacaatccatagatattccaatgatcaaaagatgggaagaga |
6797489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 449 - 553
Target Start/End: Complemental strand, 6531448 - 6531344
Alignment:
| Q |
449 |
tggtttctgatttctaaagttacatcagatatggacagacatatagaacacaatccatagatatttcaatgatcaaaataggggaagagaaacacgtaca |
548 |
Q |
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|||||||| ||||||||||| | | ||||||||||| ||| ||||||||||||||||| ||||| |||||| |||| ||||||| |||||| |||| |
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| T |
6531448 |
tggtttctaatttctaaagtaattttagatatggacacacacatagaacacaatccatatatattgtaatgattaaaaggtgggaagaaaaacacataca |
6531349 |
T |
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| Q |
549 |
aaaat |
553 |
Q |
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||||| |
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| T |
6531348 |
aaaat |
6531344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 553
Target Start/End: Original strand, 6941084 - 6941150
Alignment:
| Q |
487 |
acatatagaacacaatccatagatatttcaatgatcaaaataggggaagagaaacacgtacaaaaat |
553 |
Q |
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|||||||||||||| |||||||||||| |||||| |||| ||||||| |||||| ||||||||| |
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| T |
6941084 |
acatatagaacacagtccatagatattctaatgattaaaaggtgggaagaaaaacacatacaaaaat |
6941150 |
T |
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