View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14855_low_5 (Length: 545)
Name: NF14855_low_5
Description: NF14855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14855_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Complemental strand, 3703173 - 3702651
Alignment:
| Q |
18 |
gcatggactatcaaatatcttgataacaagtattattaagaagtgtgcttttaaaatactgatgtaacttaactatatcaactgatcttcagataaattg |
117 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3703173 |
gcatggactatcaaatatcttgataagaagtattattaagaagtgtgcttttaaaatactgatgtaacttaactatatcaactgatcttcagataaattg |
3703074 |
T |
|
| Q |
118 |
taaactatgaatgatacaaaataatacatgaaacaaaagaatgttgcaa-ttttattaattgatctcttatttggctatgaaagtgtatataattgagtt |
216 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3703073 |
taaactatgaatgatacaaaataatacatgaaagaaaagaatgttgcaatttttattaattgatctcttatttggctatgaaagtgtatataattgagtt |
3702974 |
T |
|
| Q |
217 |
acaactctgaatctaaccatacatcttatcttatacaaagccacttcaacattatg----taaataaacaaacagcaaaaaataaaatcatgttctcaga |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3702973 |
acaactctgaatctaaccatacatcttatcttatacaaagccacatcaacattatgtaaataaataaacaaacagcaaaaaataaaatcatgttctcaga |
3702874 |
T |
|
| Q |
313 |
gatgcatataacaatgatcaaaatacaacaaataacacaaagttcttaatcttataagtttaaagnnnnnnngtgcctgctaaaccatgacgcaaaagat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
3702873 |
gatgcatataacaatgatcaaaatacaacaaataacacaaagttcttaatcttataagtttaaagaaaagaagtgcctgctaaaccatgatgcaaaagat |
3702774 |
T |
|
| Q |
413 |
tatgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatc |
512 |
Q |
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| T |
3702773 |
tatgagcaatagcatctctagccttcaatgaattaactgatctcaaactaacttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatc |
3702674 |
T |
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| Q |
513 |
cattttctcgcctttcatctcac |
535 |
Q |
| |
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||||||||| ||||||||||||| |
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| T |
3702673 |
cattttctcacctttcatctcac |
3702651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 263 - 535
Target Start/End: Complemental strand, 3699231 - 3698963
Alignment:
| Q |
263 |
caacattatgtaaataaacaaacagcaaaaaataaaatcatgttctcagagatgcatataacaatgatcaaaatacaacaaataacacaaagttcttaat |
362 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
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| T |
3699231 |
caacattatgtaaataaaca----gcaaaaaagaaaatcatgttctcagagatgcataaaacaatgatcaaaatacaacaaattacacaaagttcttaat |
3699136 |
T |
|
| Q |
363 |
cttataagtttaaagnnnnnnngtgcctgctaaaccatgacgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaacta |
462 |
Q |
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| T |
3699135 |
cttatgagtttaaagaaaagaagtgcctgctaaaccatgatgcaaaagattatgagcaatagcatctctagccttcaatgaattaactgatctcaaacta |
3699036 |
T |
|
| Q |
463 |
acttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctcgcctttcatctcac |
535 |
Q |
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| T |
3699035 |
acttcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctcacctttcatctcac |
3698963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 67 - 196
Target Start/End: Complemental strand, 3699475 - 3699346
Alignment:
| Q |
67 |
tttaaaatactgatgtaacttaactatatcaactgatcttcagataaattgtaaactatgaatgatacaaaataatacatgaaacaaaagaatgttgcaa |
166 |
Q |
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||||||| | |||||||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3699475 |
tttaaaacaatgatgtaactgaactatatcaattgatcttctaataaattgtaaactaggaatgatacaaaataatccatgaaacaaaagaatgttgcaa |
3699376 |
T |
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| Q |
167 |
ttttattaattgatctcttatttggctatg |
196 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
3699375 |
ttttattaattgatctcttatttggctatg |
3699346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 3699283 - 3699251
Alignment:
| Q |
235 |
atacatcttatcttatacaaagccacttcaaca |
267 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3699283 |
atacatcttatcttatacaaagccacttcaaca |
3699251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 521
Target Start/End: Complemental strand, 39718924 - 39718869
Alignment:
| Q |
466 |
tcaggaaccatttcatcatcaacaatatcaaccataagttcaggatccattttctc |
521 |
Q |
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||||||| |||||||||||| | || ||||| | |||||||||||||||||||||| |
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| T |
39718924 |
tcaggaagcatttcatcatccaaaacatcaatcttaagttcaggatccattttctc |
39718869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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