View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14855_low_8 (Length: 449)
Name: NF14855_low_8
Description: NF14855
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14855_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 169 - 441
Target Start/End: Complemental strand, 41308831 - 41308559
Alignment:
| Q |
169 |
atttgtaggcatgcacatttagttccccaagtgagggtccatttcgcgatgatgctccaagctggtgtcttgctccatttgaaccagagggcttattgag |
268 |
Q |
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| T |
41308831 |
atttgtaggcatgcacatttagttccccaagtgagggtccatttcgtgatgatgctccaagctggtgtcttgctccatttgaaccagagggcttattgag |
41308732 |
T |
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| Q |
269 |
gtatttgtctctaaaatttgtattgagtagcatctgatatatattattagaaatatcttaaaggagttttactttttgatagttccatatcagcaatcct |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41308731 |
gtatttgtctctaaaatttgtattgagtagcatctgatatatattattagaaatatcttaaaggagttttactttttgatagttccatatcagcaatcct |
41308632 |
T |
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| Q |
369 |
ctcaggcaccattggcatccattatgggcatgtcttgattcatttcaaggttataaaatctcaccctatgcta |
441 |
Q |
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| T |
41308631 |
ctcaggcaccattggcatccattatgggcacgtcttgattcatttcaaggttataaaatctcaccctatgcta |
41308559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 41309040 - 41308884
Alignment:
| Q |
16 |
caaacttggggggttaatcatctttattctcaacctgtttggagacggttaaaggtgagtaattatatgtataaccaaaatacacaaggttcaggtcaaa |
115 |
Q |
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| T |
41309040 |
caaacttggggggttaatcatctttattctcaacctgtttggagacggttaaaggtgagtaattatatgtataaccaaaatacacaaggttcaggtcaaa |
41308941 |
T |
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| Q |
116 |
aattgatcacaagttgataaaattgttctaaataaaatggcattggtctgaatattt |
172 |
Q |
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| T |
41308940 |
aattgatcacaagttgataaaattgttctaaataaaatggcattggtctgaatattt |
41308884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 348 - 429
Target Start/End: Complemental strand, 41322703 - 41322622
Alignment:
| Q |
348 |
tagttccatatcagcaatcctctcaggcaccattggcatccattatgggcatgtcttgattcatttcaaggttataaaatct |
429 |
Q |
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| T |
41322703 |
tagttccatatcggcaatcctctcgggaaccatcggcatccattatgggcatgtcttgattcatttcaaggttacaaaatct |
41322622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 174 - 270
Target Start/End: Complemental strand, 41323380 - 41323284
Alignment:
| Q |
174 |
taggcatgcacatttagttccccaagtgagggtccatttcgcgatgatgctccaagctggtgtcttgctccatttgaaccagagggcttattgaggt |
270 |
Q |
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| T |
41323380 |
taggaatgcacattcagttctccaggcgaaggtccaattcgcgaagatgctccaagttggtgtcgtgctccatttgaaccagagggcttgttgaggt |
41323284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 348 - 421
Target Start/End: Original strand, 27659943 - 27660016
Alignment:
| Q |
348 |
tagttccatatcagcaatcctctcaggcaccattggcatccattatgggcatgtcttgattcatttcaaggtta |
421 |
Q |
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|||||| |||||||| ||||| || || |||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
27659943 |
tagttctatatcagctatcctatctgggaccattggcatccactatggacatgtcttgattcatttcaaggtta |
27660016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 27658005 - 27658058
Alignment:
| Q |
22 |
tggggggttaatcatctttattctcaacctgtttggagacggttaaaggtgagt |
75 |
Q |
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| T |
27658005 |
tggggggttaatcatctttactctcaacctgtttggagtcgcttaaaggtgagt |
27658058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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