View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14856_high_2 (Length: 302)
Name: NF14856_high_2
Description: NF14856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14856_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 36205314 - 36205034
Alignment:
| Q |
19 |
tagacggtctatggtctagttagtttatgtcatgattgttattttaactaaaatttcgtagtagtgctaatggaaaaacgtttgt----taaagagagac |
114 |
Q |
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| T |
36205314 |
tagacggtctatggtctagttagtttatgtcatgattgttattttaactaaaatttcgtagtagtgctaatggaaaaacgtgtgtgcactaaagagagac |
36205215 |
T |
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| Q |
115 |
agcagcactatctactagtttcattagtttcgttggcaccactctctatcagtgtaactaaattttggaaaggttttagaaagatggtgtatgctaccaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36205214 |
agcagcactatctactagtttcattagtttcgttggcaccactctctatcagtgtaactaaattttggaaaggttttagaaatatggtgtatgctaccaa |
36205115 |
T |
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| Q |
215 |
tttcttaaattctatcttat------ccaaaagcatagttgaagaaaatagatccataaaagtgttgagggccatgctttt |
289 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
36205114 |
tttcttaaattctatcttatccaagaccaaaagcatagttgaagaaaatagatccataaaagtgttaaggatcatgctttt |
36205034 |
T |
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