View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14856_low_1 (Length: 560)
Name: NF14856_low_1
Description: NF14856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14856_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Complemental strand, 39411051 - 39410505
Alignment:
| Q |
1 |
ccagcaccgcatattctttcaaatagttctcctcctgcagcatactccatcactatagctagatgagctggagtacatagaacctgccatcaatggaaac |
100 |
Q |
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| T |
39411051 |
ccagcactgcatattctttcaaatagttctcctcctgcagcatactccatcactatagctagatgagctggagtacatagaacctgccatcagtggaaac |
39410952 |
T |
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| Q |
101 |
tttatcttaattacaataattaatattacaatttaaagataaaactgacaagcttcatctaatcgagaaaagaaaggtgacattattgacaattttaaaa |
200 |
Q |
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| T |
39410951 |
tttatcttaatcacaataattaatattacaatttaaagataaaactgacaagctccatctaatcgagaaaagaaaggtgacattattgacaattttaaaa |
39410852 |
T |
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| Q |
201 |
ttgtttcatgtatattttgaactcgtacatgaagttacaaagtcaaactcttaatctttaacagtgaggtcacaactcacaaacaatacggtacggagaa |
300 |
Q |
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| T |
39410851 |
ttgtttcatgtatattttgaactcgtacatgaagttacaaagtcaaacttttaatctttaacagtgaggtcacaactcacaaacaatacggtacggagaa |
39410752 |
T |
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| Q |
301 |
aataatcacaagaacacacacnnnnnnnnggttattacctctttaaatctaatgatattgggatgcttcaaggacctatgatttataatctccctttgaa |
400 |
Q |
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| T |
39410751 |
caca--cacaaaaaaaaa-----------gtttattacctctttaaatctaatgatattgggatgcttcaaggacctatgatttataatctccctttgaa |
39410665 |
T |
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| Q |
401 |
catgctcatcaatctgcaacatgaaacattgaattcagtcacatgaagttactaaccaatcaacgtaagaccaaccaaagtacgaggtaacatactttat |
500 |
Q |
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| T |
39410664 |
catgctcatcaatctgcaacatgaaacattgaattcagtcacatgaagttactaaccaatcaacgtaagaccaaccaaagtacgaggtaacatactttat |
39410565 |
T |
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| Q |
501 |
aggcctaagacaaagacaacatgcatatataagcaaagagatgaagttaaaaacaagagc |
560 |
Q |
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| T |
39410564 |
aggcctaagacaaagacaacatgcatatataagcaaagagatgaagttaaaaacaagagc |
39410505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 415
Target Start/End: Complemental strand, 37601944 - 37601865
Alignment:
| Q |
336 |
tacctctttaaatctaatgatattgggatgcttcaaggacctatgatttataatctccctttgaacatgctcatcaatct |
415 |
Q |
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| T |
37601944 |
tacctctttaaatctaacaatattgggatgcttcaatgacctatgatttataatctccctttgcacgtgctcatcaatct |
37601865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 37602349 - 37602288
Alignment:
| Q |
13 |
attctttcaaatagttctcctcctgcagcatactccatcactatagctagatgagctggagt |
74 |
Q |
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| T |
37602349 |
attctttcaaatagttctcccccagcagcatattccatcactattgctaaatgagttggagt |
37602288 |
T |
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