View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14856_low_2 (Length: 388)
Name: NF14856_low_2
Description: NF14856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14856_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 41105839 - 41105470
Alignment:
| Q |
17 |
cagtaccgcgtagaagaagattaaggatgaaaccgacgcgtctaaattgcattaaatgatttgtcgcatnnnnnnncacggtatgaatatgacatgtact |
116 |
Q |
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| T |
41105839 |
cagtaccgcgtagaagaagattaaggatgaaaccgacgcgtctaaattgcattaaatgatttgtcgcataaaaaaacacggtatgaatatgacatgtact |
41105740 |
T |
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| Q |
117 |
atagatagtctaaggttattagaaaatgaaattagaaacttcgtgtgtttttcctttcaccaaaaataaagctactttataaaatcccactcactctaca |
216 |
Q |
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| T |
41105739 |
atagatagtcttaggttattagaaaatgaaattagaaacttcgtgtgtttttcctttcaccaaaaataaagctactttataaaatcccactcactctaca |
41105640 |
T |
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| Q |
217 |
atattcaacactttgtaaattaactgaaacttccaaatcatagattgtacgtatttatttacttcaactcacacactcttgtcattgtcttagagaaatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41105639 |
atattcaacactttgtaaattaactgaaacttccaaatcatagattgtacgtatttatttacttcaactcacacactcttgtcattgtcttagataaatt |
41105540 |
T |
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| Q |
317 |
tattgatatggaggttacaaagaagttgaagctaaagcatttgatatcaaaggtactaaagggtcttcat |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41105539 |
tattgatatggaggttacaaagaagttgaagctaaagcatttgatatcaaaggtactaaagggtcttcat |
41105470 |
T |
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