View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14856_low_6 (Length: 252)

Name: NF14856_low_6
Description: NF14856
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14856_low_6
NF14856_low_6
[»] scaffold0088 (6 HSPs)
scaffold0088 (1-88)||(904-993)
scaffold0088 (1-88)||(24788-24877)
scaffold0088 (1-88)||(11285-11373)
scaffold0088 (173-242)||(740-812)
scaffold0088 (173-242)||(11465-11537)
scaffold0088 (173-242)||(24624-24696)
[»] chr8 (24 HSPs)
chr8 (1-88)||(12501248-12501337)
chr8 (1-85)||(16888177-16888263)
chr8 (1-77)||(6417074-6417152)
chr8 (1-77)||(18385187-18385265)
chr8 (1-76)||(39621690-39621767)
chr8 (173-229)||(39621530-39621586)
chr8 (33-88)||(13279307-13279362)
chr8 (33-88)||(16428691-16428746)
chr8 (33-88)||(22514357-22514412)
chr8 (33-88)||(33441863-33441918)
chr8 (33-88)||(36896118-36896173)
chr8 (33-88)||(40557940-40557995)
chr8 (1-85)||(29088720-29088808)
chr8 (173-229)||(6417254-6417310)
chr8 (173-229)||(18385028-18385084)
chr8 (173-242)||(33442010-33442082)
chr8 (173-226)||(29088569-29088622)
chr8 (173-229)||(13279159-13279215)
chr8 (173-229)||(16428838-16428894)
chr8 (173-229)||(22514504-22514560)
chr8 (173-229)||(40558087-40558143)
chr8 (173-229)||(12501101-12501156)
chr8 (173-232)||(16885900-16885959)
chr8 (173-229)||(36895970-36896026)
[»] chr4 (23 HSPs)
chr4 (1-88)||(27024090-27024179)
chr4 (1-88)||(36352774-36352863)
chr4 (1-88)||(34802538-34802626)
chr4 (1-77)||(5944356-5944434)
chr4 (1-85)||(25887899-25887985)
chr4 (1-88)||(48945756-48945845)
chr4 (173-229)||(36352626-36352682)
chr4 (33-88)||(7509993-7510048)
chr4 (33-88)||(27071561-27071616)
chr4 (174-242)||(34802719-34802790)
chr4 (173-229)||(5944538-5944594)
chr4 (173-229)||(27023942-27023998)
chr4 (33-88)||(4943716-4943771)
chr4 (33-83)||(27151653-27151703)
chr4 (173-229)||(48945937-48945993)
chr4 (173-242)||(7510140-7510212)
chr4 (173-229)||(4943863-4943919)
chr4 (173-229)||(27071708-27071764)
chr4 (173-242)||(9767985-9768057)
chr4 (33-88)||(9768149-9768206)
chr4 (173-226)||(27151800-27151853)
chr4 (1-49)||(48426422-48426472)
chr4 (173-226)||(25888113-25888166)
[»] chr3 (36 HSPs)
chr3 (1-88)||(3344578-3344667)
chr3 (1-88)||(28417929-28418018)
chr3 (1-88)||(37965277-37965366)
chr3 (1-85)||(23302701-23302787)
chr3 (1-87)||(47333978-47334066)
chr3 (1-88)||(4066277-4066367)
chr3 (1-88)||(33955457-33955547)
chr3 (33-85)||(23303392-23303444)
chr3 (2-86)||(22398304-22398389)
chr3 (1-88)||(45579669-45579757)
chr3 (33-88)||(10122243-10122298)
chr3 (33-88)||(26705679-26705734)
chr3 (33-88)||(35350367-35350422)
chr3 (33-87)||(1002576-1002630)
chr3 (173-242)||(4066113-4066185)
chr3 (173-242)||(22398483-22398555)
chr3 (177-242)||(33955293-33955361)
chr3 (173-242)||(37965458-37965530)
chr3 (173-229)||(47333829-47333885)
chr3 (33-88)||(30107192-30107247)
chr3 (1-88)||(33956761-33956851)
chr3 (33-88)||(38190021-38190076)
chr3 (33-88)||(43845333-43845388)
chr3 (33-88)||(54610689-54610744)
chr3 (173-242)||(28417765-28417837)
chr3 (173-242)||(45579485-45579557)
chr3 (173-232)||(33956610-33956669)
chr3 (173-242)||(3344415-3344486)
chr3 (173-229)||(35350219-35350275)
chr3 (173-229)||(43845480-43845536)
chr3 (173-229)||(54610836-54610892)
chr3 (173-232)||(23303574-23303633)
chr3 (173-226)||(1002430-1002483)
chr3 (173-226)||(10122098-10122151)
chr3 (173-229)||(26705531-26705587)
chr3 (173-241)||(30107339-30107410)
[»] chr2 (19 HSPs)
chr2 (1-88)||(40263912-40264001)
chr2 (1-85)||(3554566-3554652)
chr2 (1-85)||(42224544-42224630)
chr2 (1-88)||(6904926-6905015)
chr2 (1-88)||(4720286-4720375)
chr2 (11-88)||(9616863-9616941)
chr2 (7-87)||(4651014-4651097)
chr2 (33-88)||(39122059-39122114)
chr2 (174-232)||(6905108-6905166)
chr2 (173-229)||(40264090-40264146)
chr2 (33-88)||(12256215-12256270)
chr2 (33-88)||(42842577-42842632)
chr2 (173-229)||(4650865-4650921)
chr2 (173-242)||(4720123-4720195)
chr2 (173-229)||(39121911-39121967)
chr2 (173-229)||(42842429-42842485)
chr2 (173-232)||(3554409-3554468)
chr2 (174-229)||(9617034-9617088)
chr2 (173-232)||(42224756-42224815)
[»] scaffold1289 (2 HSPs)
scaffold1289 (1-88)||(677-766)
scaffold1289 (173-229)||(858-914)
[»] chr7 (26 HSPs)
chr7 (1-88)||(6613143-6613232)
chr7 (1-77)||(34643391-34643469)
chr7 (1-77)||(42049798-42049876)
chr7 (1-76)||(46805253-46805330)
chr7 (1-82)||(21953747-21953830)
chr7 (1-87)||(9178906-9178994)
chr7 (173-242)||(21953577-21953649)
chr7 (33-88)||(18784171-18784226)
chr7 (33-88)||(35505371-35505426)
chr7 (33-88)||(42047129-42047184)
chr7 (173-242)||(6613324-6613396)
chr7 (173-229)||(42049979-42050035)
chr7 (173-229)||(46805434-46805490)
chr7 (33-88)||(35113884-35113939)
chr7 (33-88)||(37315645-37315700)
chr7 (33-88)||(44045111-44045166)
chr7 (173-229)||(9178757-9178813)
chr7 (173-229)||(34643233-34643289)
chr7 (1-85)||(47400332-47400417)
chr7 (173-229)||(18784023-18784079)
chr7 (173-229)||(35505518-35505574)
chr7 (173-229)||(37315497-37315553)
chr7 (173-229)||(42047276-42047332)
chr7 (173-232)||(47400157-47400216)
chr7 (176-229)||(35114034-35114087)
chr7 (12-88)||(19296064-19296142)
[»] chr6 (11 HSPs)
chr6 (1-84)||(22510753-22510838)
chr6 (1-77)||(18902707-18902785)
chr6 (1-84)||(19421084-19421169)
chr6 (173-242)||(19421265-19421334)
chr6 (33-88)||(4271175-4271230)
chr6 (33-88)||(14175949-14176004)
chr6 (33-88)||(14180485-14180540)
chr6 (173-229)||(18902548-18902604)
chr6 (173-229)||(4271027-4271083)
chr6 (173-229)||(14180632-14180688)
chr6 (173-242)||(22510934-22511006)
[»] chr5 (26 HSPs)
chr5 (1-88)||(39564784-39564873)
chr5 (1-77)||(16478669-16478747)
chr5 (1-76)||(5812117-5812194)
chr5 (5-88)||(1598229-1598314)
chr5 (1-88)||(40830960-40831049)
chr5 (4-84)||(22496530-22496613)
chr5 (1-69)||(22386505-22386575)
chr5 (173-229)||(5811957-5812013)
chr5 (33-88)||(16476116-16476171)
chr5 (33-88)||(23107088-23107143)
chr5 (33-88)||(28969105-28969160)
chr5 (173-242)||(22496380-22496452)
chr5 (173-229)||(16478850-16478906)
chr5 (33-88)||(1212235-1212290)
chr5 (33-88)||(22720861-22720916)
chr5 (33-88)||(25336595-25336650)
chr5 (33-88)||(36789243-36789298)
chr5 (173-229)||(1212087-1212143)
chr5 (173-229)||(23106940-23106996)
chr5 (173-229)||(28968957-28969013)
chr5 (173-229)||(39564637-39564692)
chr5 (173-242)||(1598065-1598137)
chr5 (173-231)||(22386363-22386421)
chr5 (173-229)||(16476263-16476319)
chr5 (173-221)||(40831141-40831189)
chr5 (173-221)||(25336742-25336790)
[»] scaffold0009 (2 HSPs)
scaffold0009 (1-77)||(198483-198561)
scaffold0009 (173-229)||(198325-198381)
[»] chr1 (30 HSPs)
chr1 (1-77)||(18410716-18410794)
chr1 (1-77)||(28645366-28645444)
chr1 (1-77)||(32523558-32523636)
chr1 (1-88)||(2023538-2023627)
chr1 (1-88)||(24775940-24776029)
chr1 (1-88)||(42807215-42807304)
chr1 (1-88)||(43642748-43642837)
chr1 (1-86)||(49005367-49005455)
chr1 (7-87)||(38984122-38984204)
chr1 (7-87)||(2840846-2840929)
chr1 (173-242)||(24776121-24776193)
chr1 (173-242)||(45537542-45537614)
chr1 (1-86)||(45537362-45537448)
chr1 (33-88)||(13497066-13497121)
chr1 (33-88)||(42436195-42436250)
chr1 (173-242)||(43642584-43642656)
chr1 (173-229)||(18410897-18410953)
chr1 (173-229)||(28645207-28645263)
chr1 (173-229)||(32523399-32523455)
chr1 (33-88)||(32050288-32050343)
chr1 (177-242)||(49005553-49005621)
chr1 (4-85)||(20274894-20274978)
chr1 (174-232)||(42807397-42807455)
chr1 (173-229)||(13497213-13497269)
chr1 (173-229)||(32050435-32050491)
chr1 (173-229)||(38983973-38984029)
chr1 (173-229)||(42436342-42436398)
chr1 (175-229)||(2841024-2841078)
chr1 (173-234)||(20275074-20275135)
chr1 (173-221)||(2023719-2023767)
[»] scaffold0007 (2 HSPs)
scaffold0007 (33-88)||(11616-11671)
scaffold0007 (173-229)||(11763-11819)
[»] scaffold1788 (2 HSPs)
scaffold1788 (33-88)||(975-1032)
scaffold1788 (173-226)||(830-883)


Alignment Details
Target: scaffold0088 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 993 - 904
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  993 ttaatattaataagatattattaaattttaaatgttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 24877 - 24788
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  24877 ttaatattaataagatattattaaattttaaatgttatgaagttaattttttctaggttacatgaaatataatctaatcgtttaatgcac 24788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 11285 - 11373
Alignment:
Q  1 ttaatattaataagatattattgaattttaaa-ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  11285 ttaatattaataagatattattgaatttaaatgttatgaagttaattttttgtaggttacatgaaatataatctaagtgtttaatgcac 11373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 812 - 740
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||   ||||||||||||||||||    
T  812 atataaatagtagcgcttttgggtacgagtacacaacaatcacaaaatatagttcttctttttctgttctctg 740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 11465 - 11537
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    ||||||||||| |||||||||||||||||||||| | |||||||||||| ||   ||||||||||||||||||    
T  11465 atataaatagtcgcgcttttgggtacgagtacacaaaaatcacaaaatatagttattctttttctgttctctg 11537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 24696 - 24624
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    ||||||||||||||||||||| | |||||||||| |||||||||||||| ||   ||||||||||||||||||    
T  24696 atataaatagtagcgcttttgagaacgagtacacaacaatcacaaaatatagttcttctttttctgttctctg 24624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 12501337 - 12501248
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12501337 ttaatattaataagatattattaaattttaaatgttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 12501248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 16888263 - 16888177
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatg 85  Q
    |||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16888263 ttaatattaataagatattattaaattttaaatattatgaagttaattttttgtaggttacatgaaatataatctaatcatttaatg 16888177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6417074 - 6417152
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatc 77  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  6417074 ttaatattaataagatattattgaattttaaatgttatgaagttaattttttgtaggttagatgaaatataatctaatc 6417152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 18385265 - 18385187
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatc 77  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  18385265 ttaatattaataagatattattgaattttaaatgttatgaagttaattttttgtaggttagatgaaatataatctaatc 18385187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 39621767 - 39621690
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaat 76  Q
    |||||||||||||| ||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||||||    
T  39621767 ttaatattaataagctattattgaattttaaatgttatgaaattaattttttgtaggttacataaaatataatctaat 39621690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 39621586 - 39621530
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  39621586 atataaatagtagcgcttttgggtacgagtacacaacaatcacaaaatatagttctt 39621530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 13279362 - 13279307
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  13279362 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 13279307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 16428691 - 16428746
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  16428691 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 16428746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 22514357 - 22514412
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  22514357 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 22514412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 33441863 - 33441918
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  33441863 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 33441918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 36896173 - 36896118
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  36896173 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 36896118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 40557940 - 40557995
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  40557940 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 40557995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 29088808 - 29088720
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaa--ttttttgtaggttacatgaaatataatctaatcgtttaatg 85  Q
    |||||||||||||||||||||| ||||| ||||  ||||||||| |  ||||||||| ||||||||||||||||||||||| |||||||    
T  29088808 ttaatattaataagatattattaaatttcaaatcttatgaagtttaatttttttgtacgttacatgaaatataatctaatcatttaatg 29088720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 6417254 - 6417310
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  6417254 atataaatagtagcgcttttaggtacgagtacacaacaatcacaaaatatagttctt 6417310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 18385084 - 18385028
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  18385084 atataaatagtagcgcttttaggtacgagtacacaacaatcacaaaatatagttctt 18385028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 33442010 - 33442082
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttct---ttttctgttctctg 242  Q
    |||||||||| || ||||||||||| |||||||| |||||||||||||| ||||||   ||||||||||||||    
T  33442010 atataaatagcagagcttttgggtatgagtacacaacaatcacaaaatatagttcttcgttttctgttctctg 33442082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 29088622 - 29088569
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagtt 226  Q
    |||||||||||||| |||||||||| |||||||| |||||||||||||| ||||    
T  29088622 atataaatagtagcacttttgggtatgagtacacaacaatcacaaaatatagtt 29088569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 13279215 - 13279159
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  13279215 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 13279159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 16428838 - 16428894
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  16428838 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 16428894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 22514504 - 22514560
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  22514504 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 22514560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 40558087 - 40558143
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  40558087 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 40558143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 12501156 - 12501101
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||| |||||||||| |||||| ||||||||||| |||||||||||||| |||||||    
T  12501156 atatcaatagtagcgtttttgg-tacgagtacacaacaatcacaaaatatagttctt 12501101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 16885959 - 16885900
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttcttttt 232  Q
    |||||||||||||| ||||| |||| |||||||| ||||||| |||||| |||| |||||    
T  16885959 atataaatagtagcacttttaggtatgagtacacaacaatcataaaatatagtttttttt 16885900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 36896026 - 36895970
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||| | | |||||| || |||||||| |||||||||||||| |||||||    
T  36896026 atataaatagtggagattttggatatgagtacacaacaatcacaaaatatagttctt 36895970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 27024179 - 27024090
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27024179 ttaatattaataagatattattgaattttaaatgttatgaagttaattttttgtaggttatatgaaatataatctaatcgtttaatgcac 27024090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 36352863 - 36352774
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36352863 ttaatattaataagatattattgaactttaaatgttatgaagttaattttttgtaggttacatgaaatataatctaattgtttaatgcac 36352774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 34802538 - 34802626
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||| ||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34802538 ttaatattaataggatattattgaattttaaatgttatgaagttaatttt-tgtaggttacatgaaatataatctaatcgtttaatgcac 34802626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5944356 - 5944434
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatc 77  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  5944356 ttaatattaataagatattattgaattttaaatgttatgaagttaattttttgtaggttagatgaaatataatctaatc 5944434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 25887899 - 25887985
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatg 85  Q
    |||||||||||||||||||||| ||||| ||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25887899 ttaatattaataagatattattaaatttcaaatcttatgaagttaattttttgtaggttacatgaaatataatctaatcatttaatg 25887985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 48945756 - 48945845
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||| | ||||| ||||  ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  48945756 ttaatattaataagatattaataaatttcaaatgttatgaagataattttttataggttacatgaaatataatctaatcgtttaatgcac 48945845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 36352682 - 36352626
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  36352682 atataaatagtagcgcttttgggtacgagtacacaacaatcacaaaatatagttctt 36352626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 7509993 - 7510048
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  7509993 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 7510048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 27071561 - 27071616
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  27071561 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 27071616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 34802719 - 34802790
Alignment:
Q  174 tataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||| ||   ||||||||||||||||||    
T  34802719 tataaatagtagcgcttttgggtacgagtacacaacaatcataaaatatagttcttctttttctgttctctg 34802790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 5944538 - 5944594
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  5944538 atataaatagtagcgcttttaggtacgagtacacaacaatcacaaaatatagttctt 5944594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 27023998 - 27023942
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||    
T  27023998 atataaatagtagcacttttgggtacgagtacacaacaatcacaaaatatagttctt 27023942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 4943716 - 4943771
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||    
T  4943716 ttatgaagttaattttttgtacgttacatgaaatataatttaattgtttaatgcac 4943771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 27151653 - 27151703
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaa 83  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  27151653 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaa 27151703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 48945937 - 48945993
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||    
T  48945937 atataaatagtagagcttttgggtatgagtacacaacaatcacaaaatatagttctt 48945993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 7510140 - 7510212
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttct---ttttctgttctctg 242  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| ||||||   ||||||||||||||    
T  7510140 atataaatagtagagtttttgggtatgagtacacaacaatcacaaaatatagttcttcgttttctgttctctg 7510212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 4943863 - 4943919
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  4943863 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 4943919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 27071708 - 27071764
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  27071708 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 27071764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 9768057 - 9767985
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| ||   ||| ||||||||||||||    
T  9768057 atataaatagtagagtttttgggtatgagtacacaacaatcacaaaatatagtttttcgttttctgttctctg 9767985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 9768206 - 9768149
Alignment:
Q  33 ttatgaagttaatttttt--gtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||  ||| ||||||||||||||||  ||||||||||||||||    
T  9768206 ttatgaagttaattttttttgtacgttacatgaaatataacttaatcgtttaatgcac 9768149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 27151800 - 27151853
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagtt 226  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| ||||    
T  27151800 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagtt 27151853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 48426422 - 48426472
Alignment:
Q  1 ttaatattaataagatattattgaattttaaa--ttatgaagttaattttt 49  Q
    |||||||||||||||||||||| ||||| |||  |||||||||||||||||    
T  48426422 ttaatattaataagatattattaaatttcaaatgttatgaagttaattttt 48426472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 25888113 - 25888166
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagtt 226  Q
    |||||||||| ||| ||||||||||  ||||||| |||||||||||||| ||||    
T  25888113 atataaatagaagcacttttgggtataagtacacaacaatcacaaaatatagtt 25888166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 3344667 - 3344578
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3344667 ttaatattaataagatattattaaattttaaatgttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 3344578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 28418018 - 28417929
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28418018 ttaatattaataagatattattaaatttcaaatgttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 28417929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 37965277 - 37965366
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37965277 ttaatattaataagatattattaaatttcaaatgttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 37965366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 23302701 - 23302787
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatg 85  Q
    |||||||||||||||||||||| ||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23302701 ttaatattaataagatattattaaatttcaaatcttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatg 23302787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 47334066 - 47333978
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgca 87  Q
    |||||||||||||||||||||| ||||| ||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47334066 ttaatattaataagatattattaaatttcaaatgttatgaagttaattctttgtaggttacatgaaatataatctaatcgtttaatgca 47333978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 4066367 - 4066277
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaatttttt-gtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4066367 ttaatattaataagatattattaaatttcaaatgttatgaagttaatttttttgtaggttacatgaaatataatctaatcgtttaatgcac 4066277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 33955547 - 33955457
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaatttttt-gtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||| ||||  ||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||    
T  33955547 ttaatattaataagatattattaaatttcaaatgttatgaagttaatttttttgtaggttacatgaaatataatctaatagttaaatgcac 33955457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 23303392 - 23303444
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatg 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23303392 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatg 23303444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 22398304 - 22398389
Alignment:
Q  2 taatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgc 86  Q
    ||||||||||||||||||||| ||||| ||||  |||||||||| ||||||||||||||||||||||||||| ||||| ||||||||    
T  22398304 taatattaataagatattattaaatttcaaatgttatgaagtta-ttttttgtaggttacatgaaatataatataatcttttaatgc 22398389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 45579757 - 45579669
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||| ||||  ||||||||||||||||| |||||||||||||||||||||||  | ||||||||||    
T  45579757 ttaatattaataagatattattaaatttcaaatgttatgaagttaatttttt-taggttacatgaaatataatctatccatttaatgcac 45579669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 10122298 - 10122243
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  10122298 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 10122243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 26705734 - 26705679
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  26705734 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 26705679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 35350422 - 35350367
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  35350422 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 35350367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 1002630 - 1002576
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgca 87  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  1002630 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgca 1002576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 4066185 - 4066113
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||| ||   ||||||||||||||||||    
T  4066185 atataaatagtagcgcttttggatacgagtacacaacaatcacaaaatatagttcttctttttctgttctctg 4066113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 22398483 - 22398555
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||   ||||||||||||| ||||    
T  22398483 atataaatagtagcgcttttgggtacgagtacacaacaatcacaaaatatagctcttctttttctgttatctg 22398555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 33955361 - 33955293
Alignment:
Q  177 aaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||   ||||||||||||||||||    
T  33955361 aaatagtagcgcttttgggtacgagtacacaacaatcacaaaatatagttcttctttttctgttctctg 33955293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 37965458 - 37965530
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||| ||   ||||||||||||||||||    
T  37965458 atataaatagtagcgcttttggatacgagtacacaacaatcacaaaatatagttcttctttttctgttctctg 37965530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 47333885 - 47333829
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||    
T  47333885 atataaatagtagcgcttttggatacgagtacacaacaatcacaaaatatagttctt 47333829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 30107192 - 30107247
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||    
T  30107192 ttatgaagttaattttttgtacgttacatgaaatataatttaattgtttaatgcac 30107247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 33956851 - 33956761
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaatttttt-gtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||  |||| ||||| ||||  ||||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||    
T  33956851 ttaatattaataagatgctattaaatttcaaatgttatgaagttaatttttttgtatgttacatgaaatataatttaatcgttaaatgcac 33956761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 38190076 - 38190021
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  38190076 ttatgaagttaattttttgtacattacatgaaatataatttaatcgtttaatgcac 38190021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 43845333 - 43845388
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||    
T  43845333 ttatgaagttaattttttgtacgttacatgaaatataatttaattgtttaatgcac 43845388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 54610689 - 54610744
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||    
T  54610689 ttatgaagttaattttttgtacgttacatgaaatataatttaattgtttaatgcac 54610744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 28417837 - 28417765
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    |||||||||||||| ||||||| ||||||||||| |||||||||||||| ||   ||||||||||||||||||    
T  28417837 atataaatagtagcacttttggatacgagtacacaacaatcacaaaatatagttcttctttttctgttctctg 28417765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 45579557 - 45579485
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaataca---gttctttttctgttctctg 242  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| |    ||||||||||||||||||    
T  45579557 atataaatagtagcgcttttgggtacgagtacacaacactcacaaaatataattcttctttttctgttctctg 45579485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 33956669 - 33956610
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttcttttt 232  Q
    ||||||||||||| ||| ||| |||||||||||| |||||||||||||| ||||||||||    
T  33956669 atataaatagtagagctcttgagtacgagtacacaacaatcacaaaatatagttcttttt 33956610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 3344486 - 3344415
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    ||||| |||||||||||||||||||||||||||| |||||||| ||||| ||   ||||||||||||||||||    
T  3344486 atatatatagtagcgcttttgggtacgagtacacaacaatcac-aaatatagttcttctttttctgttctctg 3344415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 35350275 - 35350219
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  35350275 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 35350219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 43845480 - 43845536
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  43845480 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 43845536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 54610836 - 54610892
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  54610836 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 54610892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 23303574 - 23303633
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttcttttt 232  Q
    |||||||||||||| |||||||||  |||||||| |||||||||||||| |||| |||||    
T  23303574 atataaatagtagcacttttgggtctgagtacacaacaatcacaaaatatagtttttttt 23303633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 1002483 - 1002430
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagtt 226  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| ||||    
T  1002483 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagtt 1002430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 10122151 - 10122098
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagtt 226  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| ||||    
T  10122151 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagtt 10122098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 26705587 - 26705531
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||  |||||||||||||| |||||||    
T  26705587 atataaatagtagagattttgggtatgagtacataacaatcacaaaatatagttctt 26705531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 30107339 - 30107410
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctct 241  Q
    ||||||||||| | ||||||||||| ||||| || |||||||||||||| ||   ||| |||||||||||||    
T  30107339 atataaatagttgagcttttgggtatgagtatacaacaatcacaaaatatagctcttcgttttctgttctct 30107410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 40263912 - 40264001
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40263912 ttaatattaataagatattattaaattttaaatgttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 40264001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 3554652 - 3554566
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatg 85  Q
    |||||||||||||||||||||| ||||| ||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3554652 ttaatattaataagatattattaaatttcaaatattatgaagttaattttttgtaggttacatgaaatataatctaatcatttaatg 3554566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 42224544 - 42224630
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatg 85  Q
    |||||||||||||||||||||| ||||| ||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42224544 ttaatattaataagatattattaaatttcaaatcttataaagttaattttttgtaggttacatgaaatataatctaatcgtttaatg 42224630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 6904926 - 6905015
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||| ||||  ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  6904926 ttaatattaataagatattattaaatttcaaatgttatgaagataattttttataggttacatgaaatataatctaatcgtttaatgcac 6905015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 4720375 - 4720286
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||| ||||  ||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  4720375 ttaatattaataagatattattcaatttcaaatgttataaagataattttttataggttacatgaaatataatctaatcgtttaatgcac 4720286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 9616863 - 9616941
Alignment:
Q  11 taagatattattgaattttaaa-ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9616863 taagatattattaaatttcaaagttatgaagttaattttttgtacgttacatgaaatataatctaatcgtttaatgcac 9616941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 4651097 - 4651014
Alignment:
Q  7 ttaataagatattattgaattttaaat--tatgaagttaatttttt-gtaggttacatgaaatataatctaatcgtttaatgca 87  Q
    |||||||||||||||| ||||| ||||  ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  4651097 ttaataagatattattaaatttcaaatgttatgaagttaatttttttgtaggttacatcaaatataatctaatcgtttaatgca 4651014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 39122114 - 39122059
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  39122114 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 39122059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 6905108 - 6905166
Alignment:
Q  174 tataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttcttttt 232  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||    
T  6905108 tataaatagtagcgcttttggatacgagtacacaacaatcacaaaatatagttcttttt 6905166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 40264090 - 40264146
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  40264090 atatcaatagtagcgcttttgggtacgagtacacaacaatcacaaaatatagttctt 40264146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 12256270 - 12256215
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||    
T  12256270 ttatgaagttaattttttgtacgttacatgaaatataatttaaccgtttaatgcac 12256215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 42842632 - 42842577
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||    
T  42842632 ttatgaagttaattttttgtacgttacatgaaatataatttaattgtttaatgcac 42842577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 4650921 - 4650865
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||| ||||||||||  ||||||| |||||||||||||| |||||||    
T  4650921 atataaatagtagcacttttgggtataagtacacaacaatcacaaaatatagttctt 4650865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 4720195 - 4720123
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    |||||||||||||| ||||||   |||||||||| |||||||||||||| ||   ||||||||||||||||||    
T  4720195 atataaatagtagcacttttgaaaacgagtacacaacaatcacaaaatatagttcttctttttctgttctctg 4720123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 39121967 - 39121911
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||  |||||||||||||| |||||||    
T  39121967 atataaatagtagagattttgggtatgagtacataacaatcacaaaatatagttctt 39121911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 42842485 - 42842429
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| ||||| |||||||| |||||||    
T  42842485 atataaatagtagagattttgggtatgagtacacaacaattacaaaatatagttctt 42842429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 3554468 - 3554409
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttcttttt 232  Q
    |||||||||||||| ||||| |||| || ||||| |||||||||||||| |||| |||||    
T  3554468 atataaatagtagcacttttaggtatgaatacacaacaatcacaaaatatagtttttttt 3554409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 9617034 - 9617088
Alignment:
Q  174 tataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||| ||||||||| ||||||||||| ||||||| |||||| |||||||    
T  9617034 tataaatagta-cgcttttggatacgagtacacaacaatcataaaatatagttctt 9617088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 42224756 - 42224815
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttcttttt 232  Q
    ||||||||||||||   |||||||| |||||||| |||||||||||||| |||| |||||    
T  42224756 atataaatagtagcaagtttgggtatgagtacacaacaatcacaaaatatagtttttttt 42224815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1289 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold1289
Description:

Target: scaffold1289; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 677 - 766
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  677 ttaatattaataagatattattaaattttaaatgttatgaagttaattttttataggttacatgaaatataatctaatcgtttaatgcac 766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1289; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 858 - 914
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||||||||||| | |||||||||| |||||||||||||| |||||||    
T  858 atataaatagtagcgcttttgagaacgagtacacaacaatcacaaaatatagttctt 914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 6613143 - 6613232
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6613143 ttaatattaataagatattattaaatttcaaatgttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 6613232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 34643469 - 34643391
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatc 77  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  34643469 ttaatattaataagatattattgaattttaaatgttatgaagttaattttttgtaggttagatgaaatataatctaatc 34643391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 42049798 - 42049876
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatc 77  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  42049798 ttaatattaataagatattattgaattttaaatgttatgaagttaattttttgtaggttagatgaaatataatctaatc 42049876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 46805253 - 46805330
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaat 76  Q
    |||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||    
T  46805253 ttaatattaataagatattattgaattttaaatgttatgaaattaattttttgtaggttacatgaaatataatctaat 46805330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 21953830 - 21953747
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgttta 82  Q
    |||||||||||||||||||||| ||||| ||||  ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21953830 ttaatattaataagatattattaaatttcaaatgttatgaagttaattttttgtaggttaaatgaaatataatctaatcgttta 21953747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 9178994 - 9178906
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggtta-catgaaatataatctaatcgtttaatgca 87  Q
    |||||||||||||||||||||| ||||| ||||  |||||||||||||||| |||||||| ||||||||||||||||||| |||||||||    
T  9178994 ttaatattaataagatattattaaatttcaaatgttatgaagttaattttt-gtaggttaacatgaaatataatctaatcttttaatgca 9178906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 21953649 - 21953577
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||   ||||||||||||||||||    
T  21953649 atataaatagtagcgcttttgggtacgagtacacaacaatcacaaaatatagttcttctttttctgttctctg 21953577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 18784226 - 18784171
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  18784226 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 18784171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 35505371 - 35505426
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  35505371 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 35505426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 42047129 - 42047184
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  42047129 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 42047184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 6613324 - 6613396
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||| ||   ||||||||||||||||||    
T  6613324 atataaatagtagcgcttttggatacgagtacacaacaatcacaaaatatagttcttctttttctgttctctg 6613396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 42049979 - 42050035
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  42049979 atataaatagtagcgcttttaggtacgagtacacaacaatcacaaaatatagttctt 42050035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 46805434 - 46805490
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||| |||||||    
T  46805434 atataaatagtagcgcttttgggtacgagtacacaataatcacaaaatatagttctt 46805490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 35113884 - 35113939
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||    
T  35113884 ttatgaagttaattttttgtacgttacatgaaatataatttaattgtttaatgcac 35113939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 37315700 - 37315645
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||    
T  37315700 ttatgaagttaattttttgtacgttacatgaaatataatttaattgtttaatgcac 37315645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 44045166 - 44045111
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||    
T  44045166 ttatgaagttaattttttgtacgttacatgaaatataatttaaccgtttaatgcac 44045111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 9178813 - 9178757
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||| ||||| ||||||||||||| |||||||||||||| |||||||    
T  9178813 atataaatagtagcacttttcggtacgagtacacaacaatcacaaaatatagttctt 9178757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 34643289 - 34643233
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||||||||| ||||| ||||||| |||||||||||||| |||||||    
T  34643289 atataaatagtagcgcttttaggtacaagtacacaacaatcacaaaatatagttctt 34643233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 47400417 - 47400332
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatg 85  Q
    |||||||||||||||||||||  ||||| ||||  ||| ||||||||||||| ||  |||||||||||||||||||||| |||||||    
T  47400417 ttaatattaataagatattata-aatttcaaatcttataaagttaattttttttaatttacatgaaatataatctaatcatttaatg 47400332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 18784079 - 18784023
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  18784079 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 18784023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 35505518 - 35505574
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  35505518 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 35505574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 37315553 - 37315497
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  37315553 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 37315497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 42047276 - 42047332
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  42047276 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 42047332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 232
Target Start/End: Complemental strand, 47400216 - 47400157
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttcttttt 232  Q
    |||||||||| ||| |||||||||| |||||||| |||||||||||||| |||| |||||    
T  47400216 atataaatagaagcacttttgggtatgagtacacaacaatcacaaaatatagtttttttt 47400157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 35114034 - 35114087
Alignment:
Q  176 taaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  35114034 taaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 35114087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 19296142 - 19296064
Alignment:
Q  12 aagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||| ||||| ||||  ||||||| || ||||| ||| |||||||||||||||||  |||| ||||||||||    
T  19296142 aagatattattaaatttcaaatgttatgaagctagtttttagtatgttacatgaaatataatacaatcatttaatgcac 19296064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 22510753 - 22510838
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaat 84  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22510753 ttaatattaataagatattattgaattttaaatgttatgaagttaattttttgtaggttacatgaaatataatctaatcatttaat 22510838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 18902785 - 18902707
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatc 77  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  18902785 ttaatattaataagatattattgaattttaaatgttatgaagttaattttttgtaggttagatgaaatataatctaatc 18902707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 19421084 - 19421169
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaat 84  Q
    ||||||||||||| |||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  19421084 ttaatattaataaaatattattgaattttaaatgttatgaagttaattttttgtaagttacatgaaatataatctaatcatttaat 19421169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 19421265 - 19421334
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctttttctgttctctg 242  Q
    |||||||||||||||| ||||||||| ||||||| ||||||| |||||| ||||||||||||||||||||    
T  19421265 atataaatagtagcgcatttgggtacaagtacacaacaatcataaaatatagttctttttctgttctctg 19421334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 4271230 - 4271175
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  4271230 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 4271175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 14175949 - 14176004
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  14175949 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 14176004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 14180485 - 14180540
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  14180485 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 14180540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 18902604 - 18902548
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  18902604 atataaatagtagcgcttttaggtacgagtacacaacaatcacaaaatatagttctt 18902548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 4271083 - 4271027
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  4271083 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 4271027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 14180632 - 14180688
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  14180632 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 14180688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 22510934 - 22511006
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    ||||||||||||||  ||||||  | |||||||| |||||||||||||| ||   ||||||||||||||||||    
T  22510934 atataaatagtagcatttttggtcatgagtacacaacaatcacaaaatatagttcttctttttctgttctctg 22511006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 39564873 - 39564784
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||| ||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39564873 ttaatattaataagatattattaaatttcaaatgttatgaagttaattttttgtaggttacatgaaatataatctaattgtttaatgcac 39564784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16478669 - 16478747
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatc 77  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  16478669 ttaatattaataagatattattgaattttaaatgttatgaagttaattttttgtaggttagatgaaatataatctaatc 16478747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 5812194 - 5812117
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaat 76  Q
    |||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||    
T  5812194 ttaatattaataagatattattgaattttaaatgttatgaaattaattttttgtaggttacatgaaatataatctaat 5812117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 1598314 - 1598229
Alignment:
Q  5 tattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||| ||||| ||||  |||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  1598314 tattaataagatattattaaatttcaaatgttatgaagttaattttttgtaggttacatgaaatataatataattgtttaatgcac 1598229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 40830960 - 40831049
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||| ||||  ||||||||| |||||||||||||||||||||||||||| |||| |||||||||||    
T  40830960 ttaatattaataagatattattaaatttcaaatgttatgaagttgattttttgtaggttacatgaaatataatataattgtttaatgcac 40831049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 22496613 - 22496530
Alignment:
Q  4 atattaataagatattattgaattttaaat--tatgaagttaatttttt-gtaggttacatgaaatataatctaatcgtttaat 84  Q
    ||||||||||||||||||||||||||||||  |||||| |||||||||| ||||||||||||||||||||| ||||| ||||||    
T  22496613 atattaataagatattattgaattttaaatgttatgaaattaatttttttgtaggttacatgaaatataatataatcatttaat 22496530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 22386575 - 22386505
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatata 69  Q
    |||||||||||||||||||||| ||||| ||||  ||||||||||||||||||||||||||||||||||||    
T  22386575 ttaatattaataagatattattaaatttcaaatcttatgaagttaattttttgtaggttacatgaaatata 22386505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 5812013 - 5811957
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  5812013 atataaatagtagcgcttttgggtacgagtacacaacaatcacaaaatatagttctt 5811957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 16476116 - 16476171
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  16476116 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 16476171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 23107143 - 23107088
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  23107143 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 23107088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 28969160 - 28969105
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  28969160 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 28969105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 22496452 - 22496380
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||| ||   ||||||||||||||||||    
T  22496452 atataaatagtagcacttttgggtacgagtacacaacaatcacaaaatatagttcttctttttctgttctctg 22496380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 16478850 - 16478906
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  16478850 atataaatagtagcgcttttaggtacgagtacacaacaatcacaaaatatagttctt 16478906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 1212290 - 1212235
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  1212290 ttatgaagttaattttttgtacgttacatgaaatataatttaatcatttaatgcac 1212235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 22720916 - 22720861
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||    
T  22720916 ttatgaagttaattttttgtacgttacatgaaatataatttaaccgtttaatgcac 22720861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 25336595 - 25336650
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||    
T  25336595 ttatgaagttaattttttgtacgttacatgaaatataatttaattgtttaatgcac 25336650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 36789298 - 36789243
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||    
T  36789298 ttatgaagttaattttttgtacgttacataaaatataatttaatcgtttaatgcac 36789243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 1212143 - 1212087
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  1212143 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 1212087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 23106996 - 23106940
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  23106996 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 23106940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 28969013 - 28968957
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  28969013 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 28968957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 39564692 - 39564637
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||||| |||||||| ||||||||| |||||||||||||| |||||||    
T  39564692 atataaatagtagcgtttttgggt-cgagtacacaacaatcacaaaatatagttctt 39564637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 1598137 - 1598065
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaataca---gttctttttctgttctctg 242  Q
    ||||||||||||| | |||||||| ||||||||| |||||||||||||| |    ||||||||||||||||||    
T  1598137 atataaatagtagagtttttgggttcgagtacacaacaatcacaaaatataattcttctttttctgttctctg 1598065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 22386421 - 22386363
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctttt 231  Q
    |||||||||| ||| |||||||||| |||||||| |||||||||||||| |||| ||||    
T  22386421 atataaatagaagcacttttgggtatgagtacacaacaatcacaaaatatagttttttt 22386363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 16476263 - 16476319
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||   ||||||||| |||||||| |||||||||||||| |||||||    
T  16476263 atataaatagtagatattttgggtatgagtacacaacaatcacaaaatatagttctt 16476319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 40831141 - 40831189
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaata 221  Q
    ||||||||||||| | |||||||| ||||||||| ||||||||||||||    
T  40831141 atataaatagtagagtttttgggttcgagtacacaacaatcacaaaata 40831189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 25336742 - 25336790
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaata 221  Q
    ||||||||||||| | ||||||||| ||||| || ||||||||||||||    
T  25336742 atataaatagtagagattttgggtatgagtatacaacaatcacaaaata 25336790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 198561 - 198483
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatc 77  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  198561 ttaatattaataagatattattgaattttaaatgttatgaagttaattttttgtaggttagatgaaatataatctaatc 198483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 198381 - 198325
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  198381 atataaatagtagcgcttttaggtacgagtacacaacaatcacaaaatatagttctt 198325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 18410716 - 18410794
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatc 77  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  18410716 ttaatattaataagatattattgaattttaaatgttatgaagttaattttttgtaggttagatgaaatataatctaatc 18410794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 28645444 - 28645366
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatc 77  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  28645444 ttaatattaataagatattattgaattttaaatgttatgaagttaattttttgtaggttagatgaaatataatctaatc 28645366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 32523636 - 32523558
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatc 77  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  32523636 ttaatattaataagatattattgaattttaaatgttatgaagttaattttttgtaggttagatgaaatataatctaatc 32523558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 2023538 - 2023627
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||| ||||  |||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  2023538 ttaatattaataagatattattaaatttcaaatgttatgaagttaattttttgtaggttacatgaaatataatataattgtttaatgcac 2023627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 24775940 - 24776029
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||| |||||||| ||||| ||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24775940 ttaatattaataacatattattaaatttcaaatgttatgaagttaattttttgtaggttacatgaaatataatctaaacgtttaatgcac 24776029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 42807215 - 42807304
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||| ||||  ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  42807215 ttaatattaataagatattattaaatttcaaatgttatgaagataattttttataggttacatgaaatataatctaatcgtttaatgcac 42807304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 43642837 - 43642748
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||| ||||| ||||  |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  43642837 ttaatattaataagatattattaaatttcaaatgttatgaagttaattttttgtaggttacatgaaataaaatctaaacgtttaatgcac 43642748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 49005367 - 49005455
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaatttt-ttgtaggttacatgaaatataatctaatcgtttaatgc 86  Q
    |||||||||||||||||||||| ||||| ||||  ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  49005367 ttaatattaataagatattattaaatttcaaatgttatgaagttaatttttttgtaggttacatgaaatataatataatcgtttaatgc 49005455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 38984204 - 38984122
Alignment:
Q  7 ttaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgca 87  Q
    |||||||||||||||| ||||| ||||  ||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  38984204 ttaataagatattattaaatttcaaatgttatgaagttaattttttttaggttacatcaaatataatctaatcgtttaatgca 38984122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 2840846 - 2840929
Alignment:
Q  7 ttaataagatattattgaattttaaat--tatgaagttaatttt-ttgtaggttacatgaaatataatctaatcgtttaatgca 87  Q
    |||||||||||||||| ||||| ||||  ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  2840846 ttaataagatattattaaatttcaaatgttatgaagttaatttttttgtaggttacatcaaatataatctaatcgtttaatgca 2840929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 24776121 - 24776193
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||   ||||||||||||||||||    
T  24776121 atataaatagtagcgcttttgggtacgagtacacaacaatcacaaaatatagttcttctttttctgttctctg 24776193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 45537542 - 45537614
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||   ||||||||||||||||||    
T  45537542 atataaatagtagcgcttttgggtacgagtacacaacaatcacaaaatatagctcttctttttctgttctctg 45537614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 45537362 - 45537448
Alignment:
Q  1 ttaatattaataagatattattgaattttaaat--tatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgc 86  Q
    |||||||||||||||||||||| ||||| ||||  |||||||||| ||||||||||||| ||||||||||||| ||||| ||||||||    
T  45537362 ttaatattaataagatattattaaatttcaaatgttatgaagtta-ttttttgtaggttgcatgaaatataatataatcttttaatgc 45537448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 13497066 - 13497121
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  13497066 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 13497121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 42436195 - 42436250
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  42436195 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 42436250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 43642656 - 43642584
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||| ||   ||||||||||||||||||    
T  43642656 atataaatagtagcgcttatgggtacgagtacacaacaatcacaaaatatagttcttctttttctgttctctg 43642584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 18410897 - 18410953
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  18410897 atataaatagtagcgcttttaggtacgagtacacaacaatcacaaaatatagttctt 18410953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 28645263 - 28645207
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  28645263 atataaatagtagcgcttttaggtacgagtacacaacaatcacaaaatatagttctt 28645207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 32523455 - 32523399
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||    
T  32523455 atataaatagtagcgcttttaggtacgagtacacaacaatcacaaaatatagttctt 32523399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 32050288 - 32050343
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    |||||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  32050288 ttatgaagttaattttttgtacattacatgaaatataatttaatcgtttaatgcac 32050343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 49005553 - 49005621
Alignment:
Q  177 aaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacag---ttctttttctgttctctg 242  Q
    |||||||||||||||||||||||||||||| ||||| |||||||| ||   ||||||||||||||||||    
T  49005553 aaatagtagcgcttttgggtacgagtacacaacaattacaaaatatagttcttctttttctgttctctg 49005621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 20274894 - 20274978
Alignment:
Q  4 atattaataagatattattgaattttaaat--tatgaagttaatttt-ttgtaggttacatgaaatataatctaatcgtttaatg 85  Q
    ||||||||  ||||||||| ||||| ||||  ||||||||||||||| ||||||||||||||||||||||||||||  |||||||    
T  20274894 atattaatccgatattattaaatttcaaatcttatgaagttaatttttttgtaggttacatgaaatataatctaattttttaatg 20274978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 42807397 - 42807455
Alignment:
Q  174 tataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttcttttt 232  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| ||| | ||||||||    
T  42807397 tataaatagtagcgcttttggatacgagtacacaacaatcacaatatataattcttttt 42807455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 13497213 - 13497269
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  13497213 atataaatagtagagtttttgggtatgagtacacaacaatcacaaaatatagttctt 13497269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 32050435 - 32050491
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  32050435 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 32050491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 38984029 - 38983973
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||||| ||||||||||  ||||||| |||||||||||||| |||||||    
T  38984029 atataaatagtagcacttttgggtagaagtacacaacaatcacaaaatatagttctt 38983973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 42436342 - 42436398
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  42436342 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 42436398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 2841024 - 2841078
Alignment:
Q  175 ataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    |||||||||||| ||||| ||||| ||||||| |||||||||||||| |||||||    
T  2841024 ataaatagtagcactttttggtacaagtacacaacaatcacaaaatatagttctt 2841078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 20275074 - 20275135
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctttttct 234  Q
    |||||||||||||| ||||||| || |||||||| |||||||||||||  |||| |||||||    
T  20275074 atataaatagtagcacttttggatatgagtacacaacaatcacaaaatgtagttttttttct 20275135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 2023719 - 2023767
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaata 221  Q
    ||||||||||||| | |||||||| ||||||||| ||||||||||||||    
T  2023719 atataaatagtagagtttttgggttcgagtacacaacaatcacaaaata 2023767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 11616 - 11671
Alignment:
Q  33 ttatgaagttaattttttgtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  11616 ttatgaagttaattttttgtacgttacatgaaatataatttaatcgtttaatgcac 11671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 11763 - 11819
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagttctt 229  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||    
T  11763 atataaatagtagagattttgggtatgagtacacaacaatcacaaaatatagttctt 11819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1788 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold1788
Description:

Target: scaffold1788; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 1032 - 975
Alignment:
Q  33 ttatgaagttaatttttt--gtaggttacatgaaatataatctaatcgtttaatgcac 88  Q
    ||||||||||||||||||  ||| ||||||||||||||||| ||||||||||||||||    
T  1032 ttatgaagttaattttttttgtacgttacatgaaatataatttaatcgtttaatgcac 975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1788; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 883 - 830
Alignment:
Q  173 atataaatagtagcgcttttgggtacgagtacacgacaatcacaaaatacagtt 226  Q
    ||||||||||||| | ||||||||| |||||||| |||||||||||||| ||||    
T  883 atataaatagtagagtttttgggtatgagtacacaacaatcacaaaatatagtt 830  T

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