View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14857_high_1 (Length: 535)

Name: NF14857_high_1
Description: NF14857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14857_high_1
NF14857_high_1
[»] chr3 (12 HSPs)
chr3 (18-521)||(39584548-39585049)
chr3 (20-252)||(39580919-39581161)
chr3 (388-521)||(39569063-39569199)
chr3 (302-521)||(39571880-39572099)
chr3 (87-226)||(39561964-39562102)
chr3 (87-226)||(39566643-39566781)
chr3 (447-518)||(39566405-39566476)
chr3 (145-246)||(39560633-39560735)
chr3 (450-518)||(39581339-39581407)
chr3 (459-521)||(39561693-39561755)
chr3 (145-228)||(39572145-39572228)
chr3 (300-368)||(39561839-39561906)


Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 18 - 521
Target Start/End: Original strand, 39584548 - 39585049
Alignment:
Q  18 accttatacctttggggtccccagttagggattgcattaagatactcttgattcgtatattgctacttgcaagagccaaattagaaaatctagcctttcg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39584548 accttatacctttggggtccccagttagggattgcattaagatactcttgattcgtatattgctacttgcaagagccaaattagaaaatctagcctttcg 39584647  T
Q  118 agatttacaaggttttctttggtaaaaatataatcttgaacacaatctaatgcgcatgatttaagattaagttggtgtccatgtattcacaaaaagcaca 217  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  39584648 agatttacaaggttttctttagtaaaa-tataatcttgaacacaatctaatgcgcatgatttaagattaagttggtgtccatatattcacaaaaggcaca 39584746  T
Q  218 actgagatacttggcaattttatacaatactatatcatactacatatttaaattagtgttcaaagataatagagtgcatctcggaaagcatttccaatta 317  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  39584747 actgagatacatggcaattttatacaatactatatcatactacatatt-aaattagtgttcaaagataatagagtgcatctcggaaagcatttccaattt 39584845  T
Q  318 acttttctcaactctatataatacatcactagcaacaactcaaactcaaacaaactacttcaatatattcttagctttaatttcctctctttttctaact 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  39584846 acttttctcaactctatataatacatcactagcaacaactcaaactcaaacaaaccacttcaatatattcttagctttaatttcctctccttttctaact 39584945  T
Q  418 gcaacacataactagacacatattcctaactatactctcaaattttcaatggatccatcccatataccagcttatgcaaacttcagctgtgaactgagaa 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39584946 gcaacacataactagacacatattcctaactatactctcaaattttcaatggatccatcccatataccagcttatgcaaacttcagctgtgaactgagaa 39585045  T
Q  518 taat 521  Q
    ||||    
T  39585046 taat 39585049  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 39580919 - 39581161
Alignment:
Q  20 cttatacctttggggtccccagttagggattgcattaagatactcttgattcgtatattgctacttgcaagagccaaattagaaaatctagcctttcgag 119  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||  ||||||||||||||||||    
T  39580919 cttatacctttggggtccccagttacggattgcatcaagatactcgtgattcgtatattgctacttgcaagagcaaaattgtaaaatctagcctttcgag 39581018  T
Q  120 atttacaaggttttctttggtaa-aaatataatcttgaacacaatct-------aatgcgcatgatttaagattaagttggtgtccatgtattcacaaaa 211  Q
    |||   ||  ||||||||  |||   |||| ||||| ||||||||||       |||| |||||||| || ||||||||||| |  || ||| |||||||    
T  39581019 attctaaactttttctttaataaggtatatgatcttcaacacaatctcatgtgcaatgtgcatgattcaatattaagttggtattaatatatgcacaaaa 39581118  T
Q  212 agcacaactgagatacttg-gcaa-ttttatacaatactatat 252  Q
    ||||||||||||||||| |  ||| ||||||||||||||||||    
T  39581119 agcacaactgagatactagatcaatttttatacaatactatat 39581161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 388 - 521
Target Start/End: Complemental strand, 39569199 - 39569063
Alignment:
Q  388 ttagctttaatttcctctct--ttttctaactgcaacacataactagacacatattcctaa---ctatactctcaaattttcaatggatccatcccatat 482  Q
    |||||||| |||||||||||  ||||||| || |||||||||| |||||| ||  ||||||   ||| |||||||| |||||||||||||||| ||||||    
T  39569199 ttagctttcatttcctctctctttttctagctacaacacataattagacaaat--tcctaattgctaaactctcaatttttcaatggatccattccatat 39569102  T
Q  483 accagcttatgcaaacttcagctgtgaactgagaataat 521  Q
    ||| |||||||||||||||||||||||||| ||||||||    
T  39569101 acctgcttatgcaaacttcagctgtgaactaagaataat 39569063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 302 - 521
Target Start/End: Complemental strand, 39572099 - 39571880
Alignment:
Q  302 aaagcatttccaattaacttttctcaactctatataatacatcactagcaacaactcaaactcaaacaaactacttcaatatattcttagctttaatttc 401  Q
    ||||||||||||||| |||||| ||||| ||||||||||||||||   |||||| |||||||||||| |||  |||    ||||||||| ||| ||||||    
T  39572099 aaagcatttccaatttactttt-tcaacactatataatacatcacctacaacaattcaaactcaaaccaac--ctttttcatattcttaccttcaatttc 39572003  T
Q  402 ctctcttttt-ctaactgcaacacataactagacacatattcctaacta----tactctcaaattttcaatggatccatcccatataccagcttatgcaa 496  Q
    |||||||||| ||| ||  |||||||||||||||| ||  |||||||||    |||||||||    |||||||||||||| |||||| | ||||||| ||    
T  39572002 ctctcttttttctagctaaaacacataactagacaaat--tcctaactagctatactctcaataactcaatggatccatctcatataactgcttatgtaa 39571905  T
Q  497 acttcagctgtgaactgagaataat 521  Q
    | |||||||| ||||||||||||||    
T  39571904 atttcagctgcgaactgagaataat 39571880  T

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Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 39562102 - 39561964
Alignment:
Q  87 caagagccaaattagaaaatctagcctttcgagatttacaaggttttctttggtaaaaatataatcttgaacacaatctaatgcgcatgatttaagatta 186  Q
    ||||||||||||| ||||||| ||||||||||||||   ||||||||||||  ||| | ||||||||| |||||||||| | | ||||| ||||||||||    
T  39562102 caagagccaaattggaaaatccagcctttcgagattctaaaggttttctttaataaga-tataatcttcaacacaatctcacgtgcatggtttaagatta 39562004  T
Q  187 agttggtgtccatgtattcacaaaaagcacaactgagata 226  Q
    || |||| |  || ||||||||||| ||||||||||||||    
T  39562003 agatggtattaatatattcacaaaaggcacaactgagata 39561964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 87 - 226
Target Start/End: Complemental strand, 39566781 - 39566643
Alignment:
Q  87 caagagccaaattagaaaatctagcctttcgagatttacaaggttttctttggtaaaaatataatcttgaacacaatctaatgcgcatgatttaagatta 186  Q
    ||||||||||||| ||||||||||||||||||||||   ||||||||||||  | || ||||||||||  ||||||||| ||| ||||  ||||||||||    
T  39566781 caagagccaaattggaaaatctagcctttcgagattctaaaggttttctttaat-aagatataatcttctacacaatctcatgtgcatagtttaagatta 39566683  T
Q  187 agttggtgtccatgtattcacaaaaagcacaactgagata 226  Q
    || |||| |  || |||||||||| ||||||||| |||||    
T  39566682 agatggtattaatatattcacaaagagcacaacttagata 39566643  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 447 - 518
Target Start/End: Complemental strand, 39566476 - 39566405
Alignment:
Q  447 ctatactctcaaattttcaatggatccatcccatataccagcttatgcaaacttcagctgtgaactgagaat 518  Q
    |||||||||||| ||||| |||||||||||||| ||| | ||||||||||||||||| | ||||||||||||    
T  39566476 ctatactctcaatttttcgatggatccatcccacatatctgcttatgcaaacttcagttttgaactgagaat 39566405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 39560735 - 39560633
Alignment:
Q  145 atataatcttgaacacaatctaatgcgcatgatttaagattaagttggtgtccatgtattcacaaaaagcacaactgagatacttg-gcaattttataca 243  Q
    |||||||||| |||| ||||| ||| |||||||| |||| ||||||||| |  || ||||||||||| |||||||||||||||| |  ||||||||||||    
T  39560735 atataatcttcaacataatctgatgtgcatgattcaagaataagttggtattaatatattcacaaaaggcacaactgagatactggatcaattttataca 39560636  T
Q  244 ata 246  Q
    |||    
T  39560635 ata 39560633  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 450 - 518
Target Start/End: Original strand, 39581339 - 39581407
Alignment:
Q  450 tactctcaaattttcaatggatccatcccatataccagcttatgcaaacttcagctgtgaactgagaat 518  Q
    ||||||||| |||||||||||||||| ||| ||| | ||||||||||||||||| | ||||||||||||    
T  39581339 tactctcaatttttcaatggatccatgccacatatctgcttatgcaaacttcagttttgaactgagaat 39581407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 521
Target Start/End: Complemental strand, 39561755 - 39561693
Alignment:
Q  459 attttcaatggatccatcccatataccagcttatgcaaacttcagctgtgaactgagaataat 521  Q
    ||||||||||||||||||  | | ||| || |||||||||||||| |||||||||||||||||    
T  39561755 attttcaatggatccatcgaaaacacctgcatatgcaaacttcagttgtgaactgagaataat 39561693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 39572228 - 39572145
Alignment:
Q  145 atataatcttgaacacaatctaatgcgcatgatttaagattaagttggtgtccatgtattcacaaaaagcacaactgagatact 228  Q
    ||||||| || |||||||||| ||| ||||||| |||||||||||||||    || ||||| ||||| | ||||||||||||||    
T  39572228 atataatattcaacacaatctcatgtgcatgatataagattaagttggtagtaatatattcgcaaaatgaacaactgagatact 39572145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 368
Target Start/End: Complemental strand, 39561906 - 39561839
Alignment:
Q  300 ggaaagcatttccaattaacttttctcaactctatataatacatcactagcaacaactcaaactcaaac 368  Q
    ||||||||||||||||| || ||| || || ||||||||| ||||||   |||||||||||||||||||    
T  39561906 ggaaagcatttccaatttaccttt-tccacactatataatgcatcacatacaacaactcaaactcaaac 39561839  T

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