View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14857_high_2 (Length: 469)
Name: NF14857_high_2
Description: NF14857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14857_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 20 - 459
Target Start/End: Original strand, 5565679 - 5566118
Alignment:
| Q |
20 |
ctaggttggaattgaactggaaaggaattttgacggaaaagcatctaatcttgttgagcagagtggaaaatcagctatgaatcttgttgcccttgttgca |
119 |
Q |
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| T |
5565679 |
ctaggttggaattgaactggaaaggaattttgacggaaaagcatctaatcttgttgagcagagtggaaaatcagctatgaatcttgttgcccttgttgca |
5565778 |
T |
|
| Q |
120 |
cgtcattttcctggtagaacattttcttcttttcttgtctttcattgattaagttctgaaataaattatgaccaatttgtttcactgacccttgctatga |
219 |
Q |
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| T |
5565779 |
cgtcattttcctggtagaacattttcttcttttcttgtctttcattgattaagttctgaaataaattatgaccaatttgtttcactgacccttgctatga |
5565878 |
T |
|
| Q |
220 |
aatgttctaggctttagagaccattcagtgtacaaaggccgtcaagtatttttatataaaagagctcagatatttgcagcagatttatggggtgcattcg |
319 |
Q |
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| T |
5565879 |
aatgttctaggctttagagaccattcagtgtacaaaggccgtcaagtatttttatataaaagagctcagatatttgcagcagatttatggggtgcattcg |
5565978 |
T |
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| Q |
320 |
ggggccaaggatacggcgagtttaaagacatcagctctctgaccataatggcagactacattgttccagccgtgcttcagcagcttggcattttaaagtt |
419 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5565979 |
ggggccaaggatgcggcgagtttaaagacatcagctctctgaccataatggcagactacattgttccagctgtgcttcagcagcttggcattttaaagtt |
5566078 |
T |
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| Q |
420 |
cagtccaacacttgccagtactattgaggccagtggagaa |
459 |
Q |
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| T |
5566079 |
cagtccaacacttgccagtactattgaggccagtggagaa |
5566118 |
T |
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