View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14857_high_7 (Length: 314)
Name: NF14857_high_7
Description: NF14857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14857_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 13718190 - 13718485
Alignment:
| Q |
1 |
tggcaattcgcgcaaaccaatttggccgaaaccacctccagcagaagtgatacatatggagaaacagaaaaggaaaagaagaaaaggaaggagagttgga |
100 |
Q |
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| T |
13718190 |
tggcaattcgtgcaaaccaatttggccgaaaccacctccagcagaagtggtacatatggagaaacagaaaaggaaaagaagaagaggaaggagagttgga |
13718289 |
T |
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| Q |
101 |
ttgcggtgatattctaccaccactacaattcaaccctcctttccctttatcctttcccttttcgctctactgacaccaaccaaatagaaagatgtaaatg |
200 |
Q |
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| T |
13718290 |
ttgcggtgatattccaccaccactacaattcaaccgtcctttccctttatcctttcccttttcgctctactgacaccaaccaaatagaaagatgtaaatg |
13718389 |
T |
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| Q |
201 |
gccattaatgaggacaatggatgatgactttacgctggacaatgaagacgcgtagtaacctcaaatccaaaattgatatttcattctcatacattt |
296 |
Q |
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| T |
13718390 |
cccattaatgaggacaatggatgatgactttacgctggacaatgaagacgcgtagtaacctcaaatccgaaattgatatttcattctcatacattt |
13718485 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 27322275 - 27322368
Alignment:
| Q |
195 |
taaatggccattaatgaggacaatggatgatgactttacgctggacaatgaagacgcgtagtaacctcaaatccaaaattgatatttcattctcatac |
292 |
Q |
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| T |
27322275 |
taaatgcccattaacgaggataatggatgaggactttacgctgaccaatgaaaacacgt----acctcaaatccggaattgatgttccagtctcatac |
27322368 |
T |
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