View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14857_high_8 (Length: 308)
Name: NF14857_high_8
Description: NF14857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14857_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 56 - 295
Target Start/End: Complemental strand, 23186295 - 23186048
Alignment:
| Q |
56 |
cacttcgcaatgctcaattcaaaactcttggcataatatgttg-gtgattaattaattta----tttgaggagactttgaatagta---agtctcccatt |
147 |
Q |
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| T |
23186295 |
cactttgcaatgctcaattcaaaacttttggcttaaaatgtttagtgattaattaatttagttatttcaggagactttgaatagtagtaagtctcctatt |
23186196 |
T |
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| Q |
148 |
tcagcatcttggtggtccaagcagattaaagtcattaaactaaaatacaactgagatattgatttaatccacacattatgtttagtgtgggccgtgggtg |
247 |
Q |
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| T |
23186195 |
tcagtatcttggtggtccaagcagattaaagtcattaaactaaaatacaacagagatattgatttaatccacacattatgtttagtgtgggccgtggatg |
23186096 |
T |
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| Q |
248 |
aagcaacttttaagttaacatgttatagattttgagtggaaaaatatg |
295 |
Q |
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| T |
23186095 |
aagctacttttaagttaacacgttatagattttgagtggaaaaatatg |
23186048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 23177211 - 23177011
Alignment:
| Q |
9 |
aatattagcaaggaaacaaatgtagaaccgagtgccatgataattctcacttc----gcaatgctcaattcaaaactcttggcataatatgttggtgatt |
104 |
Q |
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| T |
23177211 |
aatattagcaaggtaataattgtagaacccagtgccatgatagttcgcacttgatttgcaatgctcaattcaaaactcttggcataatatgttggtgatt |
23177112 |
T |
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| Q |
105 |
aatta-------atttatttgaggagactttgaatagtaagtctcccatttcagcatcttggtggtccaagcagattaaagtcattaaactaaaatacaa |
197 |
Q |
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| T |
23177111 |
aattattaattaatttatttgaggagactttgaatagtaagtctcccatttcagcatcttggtggtccaagcagattagagacattaaactaaaatacaa |
23177012 |
T |
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| Q |
198 |
c |
198 |
Q |
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| T |
23177011 |
c |
23177011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 23171869 - 23171675
Alignment:
| Q |
12 |
attagcaaggaaacaaatgtagaaccgagtgccatgataattctcacttcgcaatgctcaattcaaaactcttggcataatatgttggtgattaattaat |
111 |
Q |
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| T |
23171869 |
attagcaaggaaacaatgttagaatgcagtgccatgatagttcccactttgcaatgcttaattcaaaactataggcatagtaagttgctgattaatttat |
23171770 |
T |
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| Q |
112 |
t--------tatttgaggagactttgaatagtaagtctcccatttcagcatcttggtggtccaagcagattaaagtcattaaactaaaatacaac |
198 |
Q |
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| T |
23171769 |
taattcatttatttgaggagactttgaatagtgagtctcccatttcaccatcttggtggtccaagctgattaaagtcattaaactaaaatacaac |
23171675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 188 - 294
Target Start/End: Complemental strand, 23171655 - 23171549
Alignment:
| Q |
188 |
taaaatacaactgagatattgatttaatccacacattatgtttagtgtgggccgtgggtgaagcaacttttaagttaacatgttatagattttgagtgga |
287 |
Q |
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| T |
23171655 |
taaaatacaacatagatattgatttaatccacacattatatttaacgtgggccgtgggtgaagcaacttttaagttaacacgttctagaatttgagtgga |
23171556 |
T |
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| Q |
288 |
aaaatat |
294 |
Q |
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||||||| |
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| T |
23171555 |
aaaatat |
23171549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 59 - 153
Target Start/End: Complemental strand, 23170893 - 23170799
Alignment:
| Q |
59 |
ttcgcaatgctcaattcaaaactcttggcataatatgttggtgattaattaatttatttgaggagactttgaatagtaagtctcccatttcagca |
153 |
Q |
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| T |
23170893 |
ttcgcaatgctcgattcaaaaatcttggcataatatgttagggattaattactttgtttaaagagactttgagtaataagtctcacacttcagca |
23170799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 23176211 - 23176175
Alignment:
| Q |
258 |
taagttaacatgttatagattttgagtggaaaaatat |
294 |
Q |
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| T |
23176211 |
taagttaacatgttctagattttgaatggaaaaatat |
23176175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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