View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14857_low_1 (Length: 568)
Name: NF14857_low_1
Description: NF14857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14857_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 190 - 558
Target Start/End: Complemental strand, 40121973 - 40121595
Alignment:
| Q |
190 |
atagaagaacagtttacgcgcagcagctgaaaattctaatcaacgtcgcgtacaattctaa-------------aaaatctagctaaggaacagcttcca |
276 |
Q |
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| T |
40121973 |
atagaagaacagtttacgcgcagcagctgaaaattctaatcgacgtcccgtacaattcaaatgaatccattctaaaaacctagctaaagaacagcttcca |
40121874 |
T |
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| Q |
277 |
aacagatcaaactcttgggttcatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgtacat |
376 |
Q |
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| T |
40121873 |
aacagatcaaactcttgggttcatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaactaggtgt---t |
40121777 |
T |
|
| Q |
377 |
attacctccttttcctcataattctttccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggaca |
476 |
Q |
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| T |
40121776 |
attacctccttttcctcataattctttccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcactaatggagaggaca |
40121677 |
T |
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| Q |
477 |
cttcaacattgtttctgcttgatagatttttcattggaagagaaggaacaatgttcttagcagtggtatggtctgtgctgct |
558 |
Q |
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| T |
40121676 |
cttcaacattgtctctgcttgatagatttttcattggaagagaaggaacaatattcttagcagtggtatggtctgtggtgct |
40121595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 268 - 522
Target Start/End: Complemental strand, 40125534 - 40125283
Alignment:
| Q |
268 |
cagcttccaaacagatcaaactcttgggttcatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaacta |
367 |
Q |
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| T |
40125534 |
cagcttccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagagcaaattcaattccaacaaacta |
40125435 |
T |
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| Q |
368 |
ggtgtacatattacctccttttcc---tcataattctttccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggcacta |
464 |
Q |
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| T |
40125434 |
ggggt---tattacctcctcttcctgatcattattctttccaaaatattcagcttgaaagtactgataccagc---tattagtagtactcactggctcta |
40125341 |
T |
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| Q |
465 |
atggagaggacacttcaacattgtttctgcttgatagatttttcattggaagagaagg |
522 |
Q |
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| T |
40125340 |
atggaggggacacttcaacagtgtctttgtttgtgaagtttttcattggaagggaagg |
40125283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 265 - 522
Target Start/End: Complemental strand, 40093065 - 40092811
Alignment:
| Q |
265 |
gaacagcttccaaacagatcaaactcttgggttcatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagaacaaattcatttccaacaaa |
364 |
Q |
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| T |
40093065 |
gaacagcctccaaacaaatcaaactcttggggtgatgatgggaggaacaaaacaccagttaccaaaagaagttggtgagagcaaattcaattccaacaaa |
40092966 |
T |
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| Q |
365 |
ctaggtgtacatattacctccttttcc---tcataattctttccaaaatattcagcttgaaagtattgataccagctggtagtagtagtgctcaccggca |
461 |
Q |
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| T |
40092965 |
ctaggggt---tattacctcctcttcctgatcattattctttccaaaatattcagcttgaaagtactgataccagc---tattagtagtactcactggct |
40092872 |
T |
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| Q |
462 |
ctaatggagaggacacttcaacattgtttctgcttgatagatttttcattggaagagaagg |
522 |
Q |
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| T |
40092871 |
ctaatggaggggacacttcaacactgtctttgtttgtgaagtttttcattggaagggaagg |
40092811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 40122065 - 40121984
Alignment:
| Q |
20 |
ctggatacaagtttaagataacagcaatctgcaatatcagttaatgaatgtatagtctttttggcatttggtgaactcaaaa |
101 |
Q |
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| T |
40122065 |
ctggatataagtttaagataacagcaatctgcaatatcagttaatgaatgtatagtctttttggcatttggtgaactcaaaa |
40121984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 40093386 - 40093333
Alignment:
| Q |
70 |
tatagtctttttggcatttggtgaactcaaaagaaatgttaaattaaatttgaa |
123 |
Q |
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| T |
40093386 |
tatagtctttatggcatttgatgaaatcaaaataaaagttaaattaaatttgaa |
40093333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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