View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14857_low_10 (Length: 358)
Name: NF14857_low_10
Description: NF14857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14857_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 62 - 343
Target Start/End: Original strand, 40866311 - 40866587
Alignment:
| Q |
62 |
atgatcaaattacaccgatataaatgttacatcattcaatatcactttactctatatatattttttcaaatttgaca-----attgtaagtttatattat |
156 |
Q |
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| T |
40866311 |
atgatcaaattacaccgatataaatgttacatcatt----------ttactctgtatatattttttctaatttgacagtcgtattgtaagtttatatcat |
40866400 |
T |
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| Q |
157 |
ctaaatatttaaaattatttcatgttattaatactcattgagattgagggtgtatgcatttttatcaaacaccgttaattttgataggtctcagtaacat |
256 |
Q |
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| T |
40866401 |
ctaaatatttaaaattatttcatgttattaatactcattgagattgagggtgtatgcatttttatcaaacaccgttaattttgataggtctcagtaacat |
40866500 |
T |
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| Q |
257 |
agaaaattatgttatacacatagaaatttatatagatgatcagggtcgtaccaatcaaagtggagatctgactcacatagtaaaatt |
343 |
Q |
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| T |
40866501 |
agaaaattatgttatacacatagaaatttatatagatgatcagggtcgtaccaatcaaagtgaagatctgactcacatagtaaaatt |
40866587 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 137
Target Start/End: Original strand, 8918767 - 8918820
Alignment:
| Q |
84 |
aatgttacatcattcaatatcactttactctatatatattttttcaaatttgac |
137 |
Q |
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| T |
8918767 |
aatgttacatcactcaatataattttacttgatacatattttttcaaatttgac |
8918820 |
T |
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