View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14857_low_14 (Length: 298)
Name: NF14857_low_14
Description: NF14857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14857_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 112 - 259
Target Start/End: Complemental strand, 9452581 - 9452434
Alignment:
| Q |
112 |
tatccaaacttgagatgagtttggtaatgcatataagggttaaagtccttcgtccattgaaaaagacggaggatacccgacttcaaattagaggtgccga |
211 |
Q |
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| T |
9452581 |
tatccaaatttaggatgagtttggtaatgcatataaaggttaaagtccttcgtccattgaaaaagacggaggatgcctgacttcaaattagaggtgccta |
9452482 |
T |
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| Q |
212 |
gagcccaagcattttgcatatcctccaaagtggagaactcaaattcat |
259 |
Q |
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| T |
9452481 |
gagcccaagcgttttgcatatcctccaaagtggagaactcaaattcat |
9452434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 9453603 - 9453528
Alignment:
| Q |
1 |
catagtgcgcaaagtggcggtattgggttgcggactcaatgatcaaaggagttccaatcgctccggctatctcgcg |
76 |
Q |
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| T |
9453603 |
catagtgcccaaagtggcggtattgagttgcggactcaatgatcaaaggagttccaatcgctctggctatctcgcg |
9453528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 15160431 - 15160395
Alignment:
| Q |
36 |
tcaatgatcaaaggagttccaatcgctccggctatct |
72 |
Q |
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| T |
15160431 |
tcaatgatcaaaggagttccaatcgctccggctatct |
15160395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 13076632 - 13076692
Alignment:
| Q |
199 |
ttagaggtgccgagagcccaagcattttgcatatcctccaaagtggagaactcaaattcat |
259 |
Q |
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| T |
13076632 |
ttagaggtgcctagagcccaagcattgcgcatatcctctaatgaggagaactcaaattcat |
13076692 |
T |
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