View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14857_low_20 (Length: 219)
Name: NF14857_low_20
Description: NF14857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14857_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 35787124 - 35786946
Alignment:
| Q |
22 |
agataccgtggtgtaagacaacgtagttggggtaaatgggttgctgaaattcgtgaaccacgtaaacgtactcgtaaatggcttggtactttttcaactg |
121 |
Q |
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| T |
35787124 |
agataccgtggtgtaagacaacgtagttggggtaaatgggttgctgaaattcgtgaaccacgtaaacgtactcgtaaatggcttggtactttttcaactg |
35787025 |
T |
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| Q |
122 |
ctgaagatgctgctaaagcttatgatcgtgctgctattattctctatggttctagggctcagcttaatcttcaaccttc |
200 |
Q |
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| T |
35787024 |
ctgaagatgctgctaaagcttatgatcgtgctgctattattctctatggttctagggctcagcttaatcttcaaccttc |
35786946 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 25896674 - 25896641
Alignment:
| Q |
48 |
ttggggtaaatgggttgctgaaattcgtgaacca |
81 |
Q |
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| T |
25896674 |
ttggggtaaatgggttgctgagattcgtgaacca |
25896641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 52690554 - 52690586
Alignment:
| Q |
48 |
ttggggtaaatgggttgctgaaattcgtgaacc |
80 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
52690554 |
ttggggtaaatgggttgctgaaatccgtgaacc |
52690586 |
T |
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